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Items: 1 to 20 of 47

1.

Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation.

Cuartero S, Weiss FD, Dharmalingam G, Guo Y, Ing-Simmons E, Masella S, Robles-Rebollo I, Xiao X, Wang YF, Barozzi I, Djeghloul D, Amano MT, Niskanen H, Petretto E, Dowell RD, Tachibana K, Kaikkonen MU, Nasmyth KA, Lenhard B, Natoli G, Fisher AG, Merkenschlager M.

Nat Immunol. 2018 Sep;19(9):932-941. doi: 10.1038/s41590-018-0184-1. Epub 2018 Aug 20.

PMID:
30127433
2.

PI(3,5)P2 controls vacuole potassium transport to support cellular osmoregulation.

Wilson ZN, Scott AL, Dowell RD, Odorizzi G.

Mol Biol Cell. 2018 Jul 15;29(13):1718-1731. doi: 10.1091/mbc.E18-01-0015. Epub 2018 May 23.

3.

miR-MaGiC improves quantification accuracy for small RNA-seq.

Russell PH, Vestal B, Shi W, Rudra PD, Dowell R, Radcliffe R, Saba L, Kechris K.

BMC Res Notes. 2018 May 15;11(1):296. doi: 10.1186/s13104-018-3418-2.

4.

Detecting Differential Transcription Factor Activity from ATAC-Seq Data.

Tripodi IJ, Allen MA, Dowell RD.

Molecules. 2018 May 10;23(5). pii: E1136. doi: 10.3390/molecules23051136.

5.

Enhancer RNA profiling predicts transcription factor activity.

Azofeifa JG, Allen MA, Hendrix JR, Read T, Rubin JD, Dowell RD.

Genome Res. 2018 Feb 15. doi: 10.1101/gr.225755.117. [Epub ahead of print]

6.

Genome-wide dose-dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super-enhancers.

Sanchez GJ, Richmond PA, Bunker EN, Karman SS, Azofeifa J, Garnett AT, Xu Q, Wheeler GE, Toomey CM, Zhang Q, Dowell RD, Liu X.

Nucleic Acids Res. 2018 Feb 28;46(4):1756-1776. doi: 10.1093/nar/gkx1225.

7.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

8.

Transcriptome and Functional Profile of Cardiac Myocytes Is Influenced by Biological Sex.

Trexler CL, Odell AT, Jeong MY, Dowell RD, Leinwand LA.

Circ Cardiovasc Genet. 2017 Oct;10(5). pii: e001770. doi: 10.1161/CIRCGENETICS.117.001770.

9.

The Influence of Polyploidy on the Evolution of Yeast Grown in a Sub-Optimal Carbon Source.

Scott AL, Richmond PA, Dowell RD, Selmecki AM.

Mol Biol Evol. 2017 Oct 1;34(10):2690-2703. doi: 10.1093/molbev/msx205.

10.

Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications.

Ebmeier CC, Erickson B, Allen BL, Allen MA, Kim H, Fong N, Jacobsen JR, Liang K, Shilatifard A, Dowell RD, Old WM, Bentley DL, Taatjes DJ.

Cell Rep. 2017 Aug 1;20(5):1173-1186. doi: 10.1016/j.celrep.2017.07.021.

11.

A Kinase-Independent Role for Cyclin-Dependent Kinase 19 in p53 Response.

Audetat KA, Galbraith MD, Odell AT, Lee T, Pandey A, Espinosa JM, Dowell RD, Taatjes DJ.

Mol Cell Biol. 2017 Jun 15;37(13). pii: e00626-16. doi: 10.1128/MCB.00626-16. Print 2017 Jul 1.

12.

Correction: Discriminating between HuR and TTP binding sites using the k-spectrum kernel method.

Bhandare S, Goldberg DS, Dowell R.

PLoS One. 2017 Apr 12;12(4):e0175988. doi: 10.1371/journal.pone.0175988. eCollection 2017.

13.

Discriminating between HuR and TTP binding sites using the k-spectrum kernel method.

Bhandare S, Goldberg DS, Dowell R.

PLoS One. 2017 Mar 23;12(3):e0174052. doi: 10.1371/journal.pone.0174052. eCollection 2017. Erratum in: PLoS One. 2017 Apr 12;12 (4):e0175988.

14.

Model based heritability scores for high-throughput sequencing data.

Rudra P, Shi WJ, Vestal B, Russell PH, Odell A, Dowell RD, Radcliffe RA, Saba LM, Kechris K.

BMC Bioinformatics. 2017 Mar 2;18(1):143. doi: 10.1186/s12859-017-1539-6.

15.

A generative model for the behavior of RNA polymerase.

Azofeifa JG, Dowell RD.

Bioinformatics. 2017 Jan 15;33(2):227-234. doi: 10.1093/bioinformatics/btw599. Epub 2016 Sep 23.

16.

Genome characterization of the selected long- and short-sleep mouse lines.

Dowell R, Odell A, Richmond P, Malmer D, Halper-Stromberg E, Bennett B, Larson C, Leach S, Radcliffe RA.

Mamm Genome. 2016 Dec;27(11-12):574-586. Epub 2016 Sep 20.

17.

A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation.

Knox DA, Dowell RD.

IEEE/ACM Trans Comput Biol Bioinform. 2016 May-Jun;13(3):459-471. doi: 10.1109/TCBB.2015.2459708.

PMID:
27295631
18.

RNA Pol II transcription model and interpretation of GRO-seq data.

Lladser ME, Azofeifa JG, Allen MA, Dowell RD.

J Math Biol. 2017 Jan;74(1-2):77-97. doi: 10.1007/s00285-016-1014-4. Epub 2016 May 3.

PMID:
27142882
19.

Survey of cryptic unstable transcripts in yeast.

Vera JM, Dowell RD.

BMC Genomics. 2016 Apr 26;17:305. doi: 10.1186/s12864-016-2622-5.

20.

Evidence for Association Between Low Frequency Variants in CHRNA6/CHRNB3 and Antisocial Drug Dependence.

Kamens HM, Corley RP, Richmond PA, Darlington TM, Dowell R, Hopfer CJ, Stallings MC, Hewitt JK, Brown SA, Ehringer MA.

Behav Genet. 2016 Sep;46(5):693-704. doi: 10.1007/s10519-016-9792-4. Epub 2016 Apr 16.

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