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Gene conversion generates evolutionary novelty that fuels genetic conflicts.

Daugherty MD, Zanders SE.

Curr Opin Genet Dev. 2019 Aug 26;58-59:49-54. doi: 10.1016/j.gde.2019.07.011. [Epub ahead of print] Review.


Protecting the Community Through Child Vaccination.

Anderson EJ, Daugherty MA, Pickering LK, Orenstein WA, Yogev R.

Clin Infect Dis. 2018 Jul 18;67(3):464-471. doi: 10.1093/cid/ciy142.


ICTV Virus Taxonomy Profile: Polyomaviridae.

Moens U, Calvignac-Spencer S, Lauber C, Ramqvist T, Feltkamp MCW, Daugherty MD, Verschoor EJ, Ehlers B, Ictv Report Consortium.

J Gen Virol. 2017 Jun;98(6):1159-1160. doi: 10.1099/jgv.0.000839. Epub 2017 Jun 22.


Functional and Evolutionary Analyses Identify Proteolysis as a General Mechanism for NLRP1 Inflammasome Activation.

Chavarría-Smith J, Mitchell PS, Ho AM, Daugherty MD, Vance RE.

PLoS Pathog. 2016 Dec 7;12(12):e1006052. doi: 10.1371/journal.ppat.1006052. eCollection 2016 Dec.


Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals.

Daugherty MD, Schaller AM, Geballe AP, Malik HS.

Elife. 2016 May 31;5. pii: e14228. doi: 10.7554/eLife.14228.


A taxonomy update for the family Polyomaviridae.

Polyomaviridae Study Group of the International Committee on Taxonomy of Viruses, Calvignac-Spencer S, Feltkamp MC, Daugherty MD, Moens U, Ramqvist T, Johne R, Ehlers B.

Arch Virol. 2016 Jun;161(6):1739-50. doi: 10.1007/s00705-016-2794-y. Epub 2016 Feb 29.


Transferred interbacterial antagonism genes augment eukaryotic innate immune function.

Chou S, Daugherty MD, Peterson SB, Biboy J, Yang Y, Jutras BL, Fritz-Laylin LK, Ferrin MA, Harding BN, Jacobs-Wagner C, Yang XF, Vollmer W, Malik HS, Mougous JD.

Nature. 2015 Feb 5;518(7537):98-101. doi: 10.1038/nature13965. Epub 2014 Nov 24.


How a virus blocks a cellular emergency access lane to the nucleus, STAT!

Daugherty MD, Malik HS.

Cell Host Microbe. 2014 Aug 13;16(2):150-152. doi: 10.1016/j.chom.2014.07.013.


Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts.

Daugherty MD, Young JM, Kerns JA, Malik HS.

PLoS Genet. 2014 May 29;10(5):e1004403. doi: 10.1371/journal.pgen.1004403. eCollection 2014.


Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes.

Tenthorey JL, Kofoed EM, Daugherty MD, Malik HS, Vance RE.

Mol Cell. 2014 Apr 10;54(1):17-29. doi: 10.1016/j.molcel.2014.02.018. Epub 2014 Mar 20.


Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes.

Carter JJ, Daugherty MD, Qi X, Bheda-Malge A, Wipf GC, Robinson K, Roman A, Malik HS, Galloway DA.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12744-9. doi: 10.1073/pnas.1303526110. Epub 2013 Jul 11.


Rules of engagement: molecular insights from host-virus arms races.

Daugherty MD, Malik HS.

Annu Rev Genet. 2012;46:677-700. doi: 10.1146/annurev-genet-110711-155522. Review.


Comparative analysis of RNA/protein dynamics for the arginine-rich-binding motif and zinc-finger-binding motif proteins encoded by HIV-1.

Wang H, Ma X, Yeh YS, Zhu Y, Daugherty MD, Frankel AD, Musier-Forsyth K, Barbara PF.

Biophys J. 2010 Nov 17;99(10):3454-62. doi: 10.1016/j.bpj.2010.09.051.


Structural basis for cooperative RNA binding and export complex assembly by HIV Rev.

Daugherty MD, Liu B, Frankel AD.

Nat Struct Mol Biol. 2010 Nov;17(11):1337-42. doi: 10.1038/nsmb.1902. Epub 2010 Oct 17.


HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes.

Daugherty MD, Booth DS, Jayaraman B, Cheng Y, Frankel AD.

Proc Natl Acad Sci U S A. 2010 Jul 13;107(28):12481-6. doi: 10.1073/pnas.1007022107. Epub 2010 Jun 28.


A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA.

Daugherty MD, D'Orso I, Frankel AD.

Mol Cell. 2008 Sep 26;31(6):824-34. doi: 10.1016/j.molcel.2008.07.016.


An alpha-helical peptidomimetic inhibitor of the HIV-1 Rev-RRE interaction.

Mills NL, Daugherty MD, Frankel AD, Guy RK.

J Am Chem Soc. 2006 Mar 22;128(11):3496-7.


A simple motif for protein recognition in DNA secondary structures.

Landt SG, Ramirez A, Daugherty MD, Frankel AD.

J Mol Biol. 2005 Sep 2;351(5):982-94.


A single intermolecular contact mediates intramolecular stabilization of both RNA and protein.

Calabro V, Daugherty MD, Frankel AD.

Proc Natl Acad Sci U S A. 2005 May 10;102(19):6849-54. Epub 2005 Apr 27.

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