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Items: 16


Rigid Embedding of Fixed and Stained, Whole, Millimeter-Scale Specimens for Section-free 3D Histology by Micro-Computed Tomography.

Lin AY, Ding Y, Vanselow DJ, Katz SR, Yakovlev MA, Clark DP, Mandrell D, Copper JE, van Rossum DB, Cheng KC.

J Vis Exp. 2018 Oct 17;(140). doi: 10.3791/58293.


Comparative analysis of fixation and embedding techniques for optimized histological preparation of zebrafish.

Copper JE, Budgeon LR, Foutz CA, van Rossum DB, Vanselow DJ, Hubley MJ, Clark DP, Mandrell DT, Cheng KC.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jun;208:38-46. doi: 10.1016/j.cbpc.2017.11.003. Epub 2017 Nov 20.


Hybrid spectral CT reconstruction.

Clark DP, Badea CT.

PLoS One. 2017 Jul 6;12(7):e0180324. doi: 10.1371/journal.pone.0180324. eCollection 2017.


A neural network-based method for spectral distortion correction in photon counting x-ray CT.

Touch M, Clark DP, Barber W, Badea CT.

Phys Med Biol. 2016 Aug 21;61(16):6132-53. doi: 10.1088/0031-9155/61/16/6132. Epub 2016 Jul 29.


Spectrotemporal CT data acquisition and reconstruction at low dose.

Clark DP, Lee CL, Kirsch DG, Badea CT.

Med Phys. 2015 Nov;42(11):6317-36. doi: 10.1118/1.4931407.


Spectral diffusion: an algorithm for robust material decomposition of spectral CT data.

Clark DP, Badea CT.

Phys Med Biol. 2014 Nov 7;59(21):6445-66. doi: 10.1088/0031-9155/59/21/6445. Epub 2014 Oct 8.


Anatomical and functional imaging of myocardial infarction in mice using micro-CT and eXIA 160 contrast agent.

Ashton JR, Befera N, Clark D, Qi Y, Mao L, Rockman HA, Johnson GA, Badea CT.

Contrast Media Mol Imaging. 2014 Mar-Apr;9(2):161-8. doi: 10.1002/cmmi.1557.


Assessing cardiac injury in mice with dual energy-microCT, 4D-microCT, and microSPECT imaging after partial heart irradiation.

Lee CL, Min H, Befera N, Clark D, Qi Y, Das S, Johnson GA, Badea CT, Kirsch DG.

Int J Radiat Oncol Biol Phys. 2014 Mar 1;88(3):686-93. doi: 10.1016/j.ijrobp.2013.11.238. Erratum in: Int J Radiat Oncol Biol Phys. 2014 Aug 1;89(5):1145. Int J Radiat Oncol Biol Phys. 2014 Aug 1;89(5):1145.


Dual-energy micro-CT functional imaging of primary lung cancer in mice using gold and iodine nanoparticle contrast agents: a validation study.

Ashton JR, Clark DP, Moding EJ, Ghaghada K, Kirsch DG, West JL, Badea CT.

PLoS One. 2014 Feb 10;9(2):e88129. doi: 10.1371/journal.pone.0088129. eCollection 2014.


In vivo characterization of tumor vasculature using iodine and gold nanoparticles and dual energy micro-CT.

Clark DP, Ghaghada K, Moding EJ, Kirsch DG, Badea CT.

Phys Med Biol. 2013 Mar 21;58(6):1683-704. doi: 10.1088/0031-9155/58/6/1683. Epub 2013 Feb 19.


Dual-energy computed tomography imaging of atherosclerotic plaques in a mouse model using a liposomal-iodine nanoparticle contrast agent.

Bhavane R, Badea C, Ghaghada KB, Clark D, Vela D, Moturu A, Annapragada A, Johnson GA, Willerson JT, Annapragada A.

Circ Cardiovasc Imaging. 2013 Mar 1;6(2):285-94. doi: 10.1161/CIRCIMAGING.112.000119. Epub 2013 Jan 24.


Data analysis: evaluation of nanoscale contrast agent enhanced CT scan to differentiate between benign and malignant lung cancer in mouse model.

Bell RC, Rogith D, Johnson CW, Badea CT, Athreya KK, Espinosa G, Clark D, Ghafoori AP, Li Y, Kirsch DG, Annapragada A, Ghaghada K.

AMIA Annu Symp Proc. 2012;2012:27-35. Epub 2012 Nov 3.


Dual-energy micro-computed tomography imaging of radiation-induced vascular changes in primary mouse sarcomas.

Moding EJ, Clark DP, Qi Y, Li Y, Ma Y, Ghaghada K, Johnson GA, Kirsch DG, Badea CT.

Int J Radiat Oncol Biol Phys. 2013 Apr 1;85(5):1353-9. doi: 10.1016/j.ijrobp.2012.09.027. Epub 2012 Nov 1.


Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization.

Clark D, Badea A, Liu Y, Johnson GA, Badea CT.

Phys Med Biol. 2012 Oct 7;57(19):6125-45. doi: 10.1088/0031-9155/57/19/6125. Epub 2012 Sep 13.


Computed tomography imaging of primary lung cancer in mice using a liposomal-iodinated contrast agent.

Badea CT, Athreya KK, Espinosa G, Clark D, Ghafoori AP, Li Y, Kirsch DG, Johnson GA, Annapragada A, Ghaghada KB.

PLoS One. 2012;7(4):e34496. doi: 10.1371/journal.pone.0034496. Epub 2012 Apr 2.


Whole-animal imaging, gene function, and the Zebrafish Phenome Project.

Cheng KC, Xin X, Clark DP, La Riviere P.

Curr Opin Genet Dev. 2011 Oct;21(5):620-9. doi: 10.1016/j.gde.2011.08.006. Epub 2011 Sep 28. Review.

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