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Items: 17

1.
2.

Plasma carotenoids and the risk of premalignant breast disease in women aged 50 and younger: a nested case-control study.

Cohen K, Liu Y, Luo J, Appleton CM, Colditz GA.

Breast Cancer Res Treat. 2017 Apr;162(3):571-580. doi: 10.1007/s10549-017-4152-5. Epub 2017 Feb 11.

3.

Are Cystic Fibrosis Aspergillus fumigatus Isolates Different? Intermicrobial Interactions with Pseudomonas.

Nazik H, Moss RB, Karna V, Clemons KV, Banaei N, Cohen K, Choudhary V, Stevens DA.

Mycopathologia. 2017 Apr;182(3-4):315-318. doi: 10.1007/s11046-016-0087-3. Epub 2016 Nov 7.

PMID:
27822731
4.

Crowdsourcing and curation: perspectives from biology and natural language processing.

Hirschman L, Fort K, Boué S, Kyrpides N, Islamaj Doğan R, Cohen KB.

Database (Oxford). 2016 Aug 7;2016. pii: baw115. doi: 10.1093/database/baw115. Print 2016.

5.

Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning.

Cohen KB, Glass B, Greiner HM, Holland-Bouley K, Standridge S, Arya R, Faist R, Morita D, Mangano F, Connolly B, Glauser T, Pestian J.

Biomed Inform Insights. 2016 May 22;8:11-8. doi: 10.4137/BII.S38308. eCollection 2016.

6.

Erratum for Nazik et al., effects of iron chelators on the formation and development of Aspergillus fumigatus biofilm.

Nazik H, Penner JC, Ferreira JA, Haagensen JA, Cohen K, Spormann AM, Martinez M, Chen V, Hsu JL, Clemons KV, Stevens DA.

Antimicrob Agents Chemother. 2015 Nov;59(11):7160. doi: 10.1128/AAC.02353-15. No abstract available.

7.

Inhibition of Aspergillus fumigatus and Its Biofilm by Pseudomonas aeruginosa Is Dependent on the Source, Phenotype and Growth Conditions of the Bacterium.

Ferreira JA, Penner JC, Moss RB, Haagensen JA, Clemons KV, Spormann AM, Nazik H, Cohen K, Banaei N, Carolino E, Stevens DA.

PLoS One. 2015 Aug 7;10(8):e0134692. doi: 10.1371/journal.pone.0134692. eCollection 2015.

8.

Effects of Iron Chelators on the Formation and Development of Aspergillus fumigatus Biofilm.

Nazik H, Penner JC, Ferreira JA, Haagensen JA, Cohen K, Spormann AM, Martinez M, Chen V, Hsu JL, Clemons KV, Stevens DA.

Antimicrob Agents Chemother. 2015 Oct;59(10):6514-20. doi: 10.1128/AAC.01684-15. Epub 2015 Aug 3. Erratum in: Antimicrob Agents Chemother. 2015 Nov;59(11):7160.

9.

Training the next generation of quantitative biologists in the era of big data.

Pattin KA, Greene AC, Altman RB, Cohen KB, Wethington E, Görg C, Hunter LE, Muse SV, Radivojac P, Moore JH.

Pac Symp Biocomput. 2015:488-92.

10.

BioCreative-IV virtual issue.

Arighi CN, Wu CH, Cohen KB, Hirschman L, Krallinger M, Valencia A, Lu Z, Wilbur JW, Wiegers TC.

Database (Oxford). 2014 May 22;2014. pii: bau039. doi: 10.1093/database/bau039. Print 2014. No abstract available. Erratum in: Database (Oxford). 2014;2014:bau072.

11.

BioC: a minimalist approach to interoperability for biomedical text processing.

Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2013 Sep 18;2013:bat064. doi: 10.1093/database/bat064. Print 2013.

12.

Mining FDA drug labels for medical conditions.

Li Q, Deleger L, Lingren T, Zhai H, Kaiser M, Stoutenborough L, Jegga AG, Cohen KB, Solti I.

BMC Med Inform Decis Mak. 2013 Apr 24;13:53. doi: 10.1186/1472-6947-13-53.

13.

Text and data mining for biomedical discovery.

Gonzalez G, Cohen KB, Greene CS, Hahn U, Kann MG, Leaman R, Shah N, Ye J.

Pac Symp Biocomput. 2013;2013:368-72.

14.

BioCreative-2012 virtual issue.

Wu CH, Arighi CN, Cohen KB, Hirschman L, Krallinger M, Lu Z, Mattingly C, Valencia A, Wiegers TC, John Wilbur W.

Database (Oxford). 2012 Dec 5;2012:bas049. doi: 10.1093/database/bas049. Print 2012. No abstract available.

15.

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE.

BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207.

16.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

17.

Frontiers of biomedical text mining: current progress.

Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB.

Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30. Review.

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