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Items: 1 to 20 of 23

1.

Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids.

Narrowe AB, Spang A, Stairs CW, Caceres EF, Baker BJ, Miller CS, Ettema TJG.

Genome Biol Evol. 2018 Sep 1;10(9):2380-2393. doi: 10.1093/gbe/evy154.

2.

Microbial Biodiversity: Straight from the Dolphin's Mouth.

Narrowe A, Miller CS, Lozupone C.

Curr Biol. 2017 Dec 18;27(24):R1307-R1309. doi: 10.1016/j.cub.2017.10.068.

PMID:
29257962
3.

Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions.

Angle JC, Morin TH, Solden LM, Narrowe AB, Smith GJ, Borton MA, Rey-Sanchez C, Daly RA, Mirfenderesgi G, Hoyt DW, Riley WJ, Miller CS, Bohrer G, Wrighton KC.

Nat Commun. 2017 Nov 16;8(1):1567. doi: 10.1038/s41467-017-01753-4.

4.

High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils.

Narrowe AB, Angle JC, Daly RA, Stefanik KC, Wrighton KC, Miller CS.

Environ Microbiol. 2017 Jun;19(6):2192-2209. doi: 10.1111/1462-2920.13703. Epub 2017 Mar 28.

PMID:
28217877
5.

Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.

Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, Banfield JF.

Front Microbiol. 2016 Mar 3;7:238. doi: 10.3389/fmicb.2016.00238. eCollection 2016.

6.

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.

Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF.

ISME J. 2015 Dec;9(12):2697-711. doi: 10.1038/ismej.2015.66. Epub 2015 Apr 28.

7.

Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure.

Narrowe AB, Albuthi-Lantz M, Smith EP, Bower KJ, Roane TM, Vajda AM, Miller CS.

Microbiome. 2015 Mar 3;3:6. doi: 10.1186/s40168-015-0069-6. eCollection 2015.

8.

Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.

Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF.

Environ Microbiol. 2015 Mar;17(3):622-36. doi: 10.1111/1462-2920.12467. Epub 2014 Apr 18.

PMID:
24674078
9.

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF.

Microbiome. 2014 Jan 28;2(1):1. doi: 10.1186/2049-2618-2-1.

10.

Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE.

Miller CS.

Methods Enzymol. 2013;531:333-52. doi: 10.1016/B978-0-12-407863-5.00017-4.

PMID:
24060129
11.

Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.

Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF.

PLoS One. 2013;8(2):e56018. doi: 10.1371/journal.pone.0056018. Epub 2013 Feb 6.

12.

Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.

Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF.

ISME J. 2013 Apr;7(4):800-16. doi: 10.1038/ismej.2012.148. Epub 2012 Nov 29.

13.

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF.

Science. 2012 Sep 28;337(6102):1661-5. Erratum in: Science. 2012 Nov 9;338(6108):742.

PMID:
23019650
14.

Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities.

Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF.

Appl Environ Microbiol. 2012 Dec;78(23):8321-30. doi: 10.1128/AEM.01938-12. Epub 2012 Sep 21.

15.

A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.

Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A.

Nucleic Acids Res. 2011 Dec;39(22):9695-704. doi: 10.1093/nar/gkr692. Epub 2011 Aug 31.

16.

Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass.

Gladden JM, Allgaier M, Miller CS, Hazen TC, VanderGheynst JS, Hugenholtz P, Simmons BA, Singer SW.

Appl Environ Microbiol. 2011 Aug 15;77(16):5804-12. doi: 10.1128/AEM.00032-11. Epub 2011 Jul 1.

17.

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.

Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF.

Genome Biol. 2011;12(5):R44. doi: 10.1186/gb-2011-12-5-r44. Epub 2011 May 19.

18.

Assessing the reliability of scores produced by the substance abuse subtle screening inventory.

Miller CS, Woodson J, Howell RT, Shields AL.

Subst Use Misuse. 2009;44(8):1090-100. doi: 10.1080/10826080802486772.

PMID:
19544146
19.

Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy.

Cruz D, Watson AD, Miller CS, Montoya D, Ochoa MT, Sieling PA, Gutierrez MA, Navab M, Reddy ST, Witztum JL, Fogelman AM, Rea TH, Eisenberg D, Berliner J, Modlin RL.

J Clin Invest. 2008 Aug;118(8):2917-28. doi: 10.1172/JCI34189.

20.

Using inferred residue contacts to distinguish between correct and incorrect protein models.

Miller CS, Eisenberg D.

Bioinformatics. 2008 Jul 15;24(14):1575-82. doi: 10.1093/bioinformatics/btn248. Epub 2008 May 29.

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