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Items: 19

1.

Evolution in the light of fitness landscape theory.

Fragata I, Blanckaert A, Dias Louro MA, Liberles DA, Bank C.

Trends Ecol Evol. 2019 Jan;34(1):69-82. doi: 10.1016/j.tree.2018.10.009. Epub 2018 Dec 21. Review.

PMID:
30583805
2.

In search of the Goldilocks zone for hybrid speciation.

Blanckaert A, Bank C.

PLoS Genet. 2018 Sep 7;14(9):e1007613. doi: 10.1371/journal.pgen.1007613. eCollection 2018 Sep.

3.

The fitness landscape of the codon space across environments.

Fragata I, Matuszewski S, Schmitz MA, Bataillon T, Jensen JD, Bank C.

Heredity (Edinb). 2018 Nov;121(5):422-437. doi: 10.1038/s41437-018-0125-7. Epub 2018 Aug 20.

PMID:
30127529
4.

Conflict between heterozygote advantage and hybrid incompatibility in haplodiploids (and sex chromosomes).

Ghenu AH, Blanckaert A, Butlin RK, Kulmuni J, Bank C.

Mol Ecol. 2018 Oct;27(19):3935-3949. doi: 10.1111/mec.14482. Epub 2018 Feb 10.

PMID:
29328538
5.

The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution.

Ormond L, Liu P, Matuszewski S, Renzette N, Bank C, Zeldovich K, Bolon DN, Kowalik TF, Finberg RW, Jensen JD, Wang JP.

Genome Biol Evol. 2017 Jul 1;9(7):1913-1924. doi: 10.1093/gbe/evx138.

6.

Two sides of the same coin: A population genetics perspective on lethal mutagenesis and mutational meltdown.

Matuszewski S, Ormond L, Bank C, Jensen JD.

Virus Evol. 2017 Mar 2;3(1):vex004. doi: 10.1093/ve/vex004. eCollection 2017 Jan.

7.

On the (un)predictability of a large intragenic fitness landscape.

Bank C, Matuszewski S, Hietpas RT, Jensen JD.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):14085-14090. Epub 2016 Nov 18.

8.

An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy.

Bank C, Renzette N, Liu P, Matuszewski S, Shim H, Foll M, Bolon DN, Zeldovich KB, Kowalik TF, Finberg RW, Wang JP, Jensen JD.

Evolution. 2016 Nov;70(11):2470-2484. doi: 10.1111/evo.13041. Epub 2016 Sep 13.

PMID:
27566611
9.

A Statistical Guide to the Design of Deep Mutational Scanning Experiments.

Matuszewski S, Hildebrandt ME, Ghenu AH, Jensen JD, Bank C.

Genetics. 2016 Sep;204(1):77-87. doi: 10.1534/genetics.116.190462. Epub 2016 Jul 13.

10.

A Balance between Inhibitor Binding and Substrate Processing Confers Influenza Drug Resistance.

Jiang L, Liu P, Bank C, Renzette N, Prachanronarong K, Yilmaz LS, Caffrey DR, Zeldovich KB, Schiffer CA, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Bolon DNA.

J Mol Biol. 2016 Feb 13;428(3):538-553. doi: 10.1016/j.jmb.2015.11.027. Epub 2015 Dec 4.

PMID:
26656922
11.

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

SIB Swiss Institute of Bioinformatics Members.

Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28.

12.

Thinking too positive? Revisiting current methods of population genetic selection inference.

Bank C, Ewing GB, Ferrer-Admettla A, Foll M, Jensen JD.

Trends Genet. 2014 Dec;30(12):540-6. doi: 10.1016/j.tig.2014.09.010. Epub 2014 Nov 19. Review.

PMID:
25438719
13.

A systematic survey of an intragenic epistatic landscape.

Bank C, Hietpas RT, Jensen JD, Bolon DN.

Mol Biol Evol. 2015 Jan;32(1):229-38. doi: 10.1093/molbev/msu301. Epub 2014 Nov 3.

14.

Influenza virus drug resistance: a time-sampled population genetics perspective.

Foll M, Poh YP, Renzette N, Ferrer-Admetlla A, Bank C, Shim H, Malaspinas AS, Ewing G, Liu P, Wegmann D, Caffrey DR, Zeldovich KB, Bolon DN, Wang JP, Kowalik TF, Schiffer CA, Finberg RW, Jensen JD.

PLoS Genet. 2014 Feb 27;10(2):e1004185. doi: 10.1371/journal.pgen.1004185. eCollection 2014 Feb.

15.

Genomics and the origin of species.

Seehausen O, Butlin RK, Keller I, Wagner CE, Boughman JW, Hohenlohe PA, Peichel CL, Saetre GP, Bank C, Brännström A, Brelsford A, Clarkson CS, Eroukhmanoff F, Feder JL, Fischer MC, Foote AD, Franchini P, Jiggins CD, Jones FC, Lindholm AK, Lucek K, Maan ME, Marques DA, Martin SH, Matthews B, Meier JI, Möst M, Nachman MW, Nonaka E, Rennison DJ, Schwarzer J, Watson ET, Westram AM, Widmer A.

Nat Rev Genet. 2014 Mar;15(3):176-92. doi: 10.1038/nrg3644. Review.

16.

A bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments.

Bank C, Hietpas RT, Wong A, Bolon DN, Jensen JD.

Genetics. 2014 Mar;196(3):841-52. doi: 10.1534/genetics.113.156190. Epub 2014 Jan 7.

17.

Shifting fitness landscapes in response to altered environments.

Hietpas RT, Bank C, Jensen JD, Bolon DNA.

Evolution. 2013 Dec;67(12):3512-22. doi: 10.1111/evo.12207. Epub 2013 Aug 2.

18.

The limits to parapatric speciation: Dobzhansky-Muller incompatibilities in a continent-island model.

Bank C, Bürger R, Hermisson J.

Genetics. 2012 Jul;191(3):845-63. doi: 10.1534/genetics.111.137513. Epub 2012 Apr 27.

19.

Can reinforcement complete speciation?

Bank C, Hermisson J, Kirkpatrick M.

Evolution. 2012 Jan;66(1):229-39. doi: 10.1111/j.1558-5646.2011.01423.x. Epub 2011 Aug 28.

PMID:
22220877

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