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Items: 1 to 20 of 33


Combining Pathway Identification and Breast Cancer Survival Prediction via Screening-Network Methods.

Iuliano A, Occhipinti A, Angelini C, De Feis I, Liò P.

Front Genet. 2018 Jun 14;9:206. doi: 10.3389/fgene.2018.00206. eCollection 2018.


Nano carbon black-based screen printed sensor for carbofuran, isoprocarb, carbaryl and fenobucarb detection: application to grain samples.

Della Pelle F, Angelini C, Sergi M, Del Carlo M, Pepe A, Compagnone D.

Talanta. 2018 Aug 15;186:389-396. doi: 10.1016/j.talanta.2018.04.082. Epub 2018 Apr 30.


ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing.

Gatto S, Gagliardi M, Franzese M, Leppert S, Papa M, Cammisa M, Grillo G, Velasco G, Francastel C, Toubiana S, D'Esposito M, Angelini C, Matarazzo MR.

Nucleic Acids Res. 2017 Jun 2;45(10):5739-5756. doi: 10.1093/nar/gkx163.


Distinct Antigen Delivery Systems Induce Dendritic Cells' Divergent Transcriptional Response: New Insights from a Comparative and Reproducible Computational Analysis.

Costa V, Righelli D, Russo F, De Berardinis P, Angelini C, D'Apice L.

Int J Mol Sci. 2017 Feb 25;18(3). pii: E494. doi: 10.3390/ijms18030494.


Vitamin C and l-Proline Antagonistic Effects Capture Alternative States in the Pluripotency Continuum.

D'Aniello C, Habibi E, Cermola F, Paris D, Russo F, Fiorenzano A, Di Napoli G, Melck DJ, Cobellis G, Angelini C, Fico A, Blelloch R, Motta A, Stunnenberg HG, De Cesare D, Patriarca EJ, Minchiotti G.

Stem Cell Reports. 2017 Jan 10;8(1):1-10. doi: 10.1016/j.stemcr.2016.11.011. Epub 2016 Dec 22.


A Macroscopic Mathematical Model for Cell Migration Assays Using a Real-Time Cell Analysis.

Di Costanzo E, Ingangi V, Angelini C, Carfora MF, Carriero MV, Natalini R.

PLoS One. 2016 Sep 28;11(9):e0162553. doi: 10.1371/journal.pone.0162553. eCollection 2016.


Cripto is essential to capture mouse epiblast stem cell and human embryonic stem cell pluripotency.

Fiorenzano A, Pascale E, D'Aniello C, Acampora D, Bassalert C, Russo F, Andolfi G, Biffoni M, Francescangeli F, Zeuner A, Angelini C, Chazaud C, Patriarca EJ, Fico A, Minchiotti G.

Nat Commun. 2016 Sep 2;7:12589. doi: 10.1038/ncomms12589.


Cancer Markers Selection Using Network-Based Cox Regression: A Methodological and Computational Practice.

Iuliano A, Occhipinti A, Angelini C, De Feis I, Lió P.

Front Physiol. 2016 Jun 17;7:208. doi: 10.3389/fphys.2016.00208. eCollection 2016.


ZFP57 maintains the parent-of-origin-specific expression of the imprinted genes and differentially affects non-imprinted targets in mouse embryonic stem cells.

Riso V, Cammisa M, Kukreja H, Anvar Z, Verde G, Sparago A, Acurzio B, Lad S, Lonardo E, Sankar A, Helin K, Feil R, Fico A, Angelini C, Grimaldi G, Riccio A.

Nucleic Acids Res. 2016 Sep 30;44(17):8165-78. doi: 10.1093/nar/gkw505. Epub 2016 Jun 1.


Rebalancing gene haploinsufficiency in vivo by targeting chromatin.

Fulcoli FG, Franzese M, Liu X, Zhang Z, Angelini C, Baldini A.

Nat Commun. 2016 Jun 3;7:11688. doi: 10.1038/ncomms11688.


An atlas of gene expression and gene co-regulation in the human retina.

Pinelli M, Carissimo A, Cutillo L, Lai CH, Mutarelli M, Moretti MN, Singh MV, Karali M, Carrella D, Pizzo M, Russo F, Ferrari S, Ponzin D, Angelini C, Banfi S, di Bernardo D.

Nucleic Acids Res. 2016 Jul 8;44(12):5773-84. doi: 10.1093/nar/gkw486. Epub 2016 May 27.


Overproduction of Indole-3-Acetic Acid in Free-Living Rhizobia Induces Transcriptional Changes Resembling Those Occurring in Nodule Bacteroids.

Defez R, Esposito R, Angelini C, Bianco C.

Mol Plant Microbe Interact. 2016 Jun;29(6):484-95. doi: 10.1094/MPMI-01-16-0010-R. Epub 2016 May 3.


Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq Experiments.

Russo F, Righelli D, Angelini C.

Biomed Res Int. 2016;2016:7972351. doi: 10.1155/2016/7972351. Epub 2016 Feb 10.


On the genome base composition of teleosts: the effect of environment and lifestyle.

Tarallo A, Angelini C, Sanges R, Yagi M, Agnisola C, D'Onofrio G.

BMC Genomics. 2016 Mar 2;17:173. doi: 10.1186/s12864-016-2537-1.


ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.

Anvar Z, Cammisa M, Riso V, Baglivo I, Kukreja H, Sparago A, Girardot M, Lad S, De Feis I, Cerrato F, Angelini C, Feil R, Pedone PV, Grimaldi G, Riccio A.

Nucleic Acids Res. 2016 Feb 18;44(3):1118-32. doi: 10.1093/nar/gkv1059. Epub 2015 Oct 19.


Short interspersed DNA elements and miRNAs: a novel hidden gene regulation layer in zebrafish?

Scarpato M, Angelini C, Cocca E, Pallotta MM, Morescalchi MA, Capriglione T.

Chromosome Res. 2015 Sep;23(3):533-44. doi: 10.1007/s10577-015-9484-6.


Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics.

Facchiano A, Angelini C, Bosotti R, Guffanti A, Marabotti A, Marangoni R, Pascarella S, Romano P, Zanzoni A, Helmer-Citterich M.

BMC Bioinformatics. 2015;16 Suppl 9:S1. doi: 10.1186/1471-2105-16-S9-S1. Epub 2015 Jun 1.


Is this the right normalization? A diagnostic tool for ChIP-seq normalization.

Angelini C, Heller R, Volkinshtein R, Yekutieli D.

BMC Bioinformatics. 2015 May 9;16:150. doi: 10.1186/s12859-015-0579-z.


Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems.

Angelini C, Costa V.

Front Cell Dev Biol. 2014 Sep 17;2:51. doi: 10.3389/fcell.2014.00051. eCollection 2014.


Computational approaches for isoform detection and estimation: good and bad news.

Angelini C, De Canditiis D, De Feis I.

BMC Bioinformatics. 2014 May 9;15:135. doi: 10.1186/1471-2105-15-135.

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