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Items: 11

1.

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.

Antonacci F, Dennis MY, Huddleston J, Sudmant PH, Steinberg KM, Rosenfeld JA, Miroballo M, Graves TA, Vives L, Malig M, Denman L, Raja A, Stuart A, Tang J, Munson B, Shaffer LG, Amemiya CT, Wilson RK, Eichler EE.

Nat Genet. 2014 Dec;46(12):1293-302. doi: 10.1038/ng.3120. Epub 2014 Oct 19.

2.

The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.

Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF.

Cell. 2014 Aug 28;158(5):1187-1198. doi: 10.1016/j.cell.2014.07.034.

3.

Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species.

Sumiyama K, Miyake T, Grimwood J, Stuart A, Dickson M, Schmutz J, Ruddle FH, Myers RM, Amemiya CT.

J Exp Zool B Mol Dev Evol. 2012 Dec;318(8):639-50. doi: 10.1002/jez.b.22469. Epub 2012 Sep 5.

4.

Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC.

Cheng Y, Stuart A, Morris K, Taylor R, Siddle H, Deakin J, Jones M, Amemiya CT, Belov K.

BMC Genomics. 2012 Mar 12;13:87. doi: 10.1186/1471-2164-13-87.

5.

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour.

Deakin JE, Bender HS, Pearse AM, Rens W, O'Brien PC, Ferguson-Smith MA, Cheng Y, Morris K, Taylor R, Stuart A, Belov K, Amemiya CT, Murchison EP, Papenfuss AT, Graves JA.

PLoS Genet. 2012;8(2):e1002483. doi: 10.1371/journal.pgen.1002483. Epub 2012 Feb 16. Erratum in: PLoS Genet. 2014 Oct;10(10):e1004840.

6.

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus).

Soler L, Conte MA, Katagiri T, Howe AE, Lee BY, Amemiya C, Stuart A, Dossat C, Poulain J, Johnson J, Di Palma F, Lindblad-Toh K, Baroiller JF, D'Cotta H, Ozouf-Costaz C, Kocher TD.

BMC Genomics. 2010 Nov 16;11:636. doi: 10.1186/1471-2164-11-636.

7.

BAC library for the amphipod crustacean, Parhyale hawaiensis.

Parchem RJ, Poulin F, Stuart AB, Amemiya CT, Patel NH.

Genomics. 2010 May;95(5):261-7. doi: 10.1016/j.ygeno.2010.03.005. Epub 2010 Mar 16.

8.

Genome enablement of the notothenioidei: genome size estimates from 11 species and BAC libraries from 2 representative taxa.

Detrich HW, Stuart A, Schoenborn M, Parker SK, Methé BA, Amemiya CT.

J Exp Zool B Mol Dev Evol. 2010 Jul 15;314(5):369-81. doi: 10.1002/jez.b.21341.

9.

Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution.

Smith JJ, Stuart AB, Sauka-Spengler T, Clifton SW, Amemiya CT.

Chromosoma. 2010 Aug;119(4):381-9. doi: 10.1007/s00412-010-0263-z. Epub 2010 Mar 2.

10.

Characterization of the antimicrobial peptide attacin loci from Glossina morsitans.

Wang J, Hu C, Wu Y, Stuart A, Amemiya C, Berriman M, Toyoda A, Hattori M, Aksoy S.

Insect Mol Biol. 2008 Jun;17(3):293-302. doi: 10.1111/j.1365-2583.2008.00805.x.

11.

Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110.

Trede NS, Medenbach J, Damianov A, Hung LH, Weber GJ, Paw BH, Zhou Y, Hersey C, Zapata A, Keefe M, Barut BA, Stuart AB, Katz T, Amemiya CT, Zon LI, Bindereif A.

Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6608-13. Epub 2007 Apr 6.

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