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Items: 1 to 20 of 24

1.

A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.

Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone ME.

Int Rev Neurobiol. 2012;103:39-68. doi: 10.1016/B978-0-12-388408-4.00003-4. Review.

PMID:
23195120
2.

Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.

Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone ME.

Front Genet. 2012 Jun 22;3:111. doi: 10.3389/fgene.2012.00111. eCollection 2012.

3.

iDASH: integrating data for analysis, anonymization, and sharing.

Ohno-Machado L, Bafna V, Boxwala AA, Chapman BE, Chapman WW, Chaudhuri K, Day ME, Farcas C, Heintzman ND, Jiang X, Kim H, Kim J, Matheny ME, Resnic FS, Vinterbo SA; iDASH team.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):196-201. doi: 10.1136/amiajnl-2011-000538. Epub 2011 Nov 10.

4.

BiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studies.

Kozhenkov S, Sedova M, Dubinina Y, Gupta A, Ray A, Ponomarenko J, Baitaluk M.

BMC Syst Biol. 2011 Jan 14;5:7. doi: 10.1186/1752-0509-5-7.

5.

BiologicalNetworks 2.0--an integrative view of genome biology data.

Kozhenkov S, Dubinina Y, Sedova M, Gupta A, Ponomarenko J, Baitaluk M.

BMC Bioinformatics. 2010 Dec 29;11:610. doi: 10.1186/1471-2105-11-610.

6.

Mediator infrastructure for information integration and semantic data integration environment for biomedical research.

Grethe JS, Ross E, Little D, Sanders B, Gupta A, Astakhov V.

Methods Mol Biol. 2009;569:33-53. doi: 10.1007/978-1-59745-524-4_3.

PMID:
19623485
7.

Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data.

Bug W, Astahkov V, Boline J, Fennema-Notestine C, Grethe JS, Gupta A, Kennedy DN, Rubin DL, Sanders B, Turner JA, Martone ME.

AMIA Annu Symp Proc. 2008 Nov 6:1220.

PMID:
18999211
8.

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME.

Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z. Epub 2008 Oct 31.

9.

A formal ontology of subcellular neuroanatomy.

Larson SD, Fong LL, Gupta A, Condit C, Bug WJ, Martone ME.

Front Neuroinform. 2007 Nov 2;1:3. doi: 10.3389/neuro.11.003.2007. eCollection 2007.

10.

Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF).

Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone ME.

Neuroinformatics. 2008 Sep;6(3):205-17. doi: 10.1007/s12021-008-9033-y. Epub 2008 Oct 29.

11.

The neuroscience information framework: a data and knowledge environment for neuroscience.

Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW.

Neuroinformatics. 2008 Sep;6(3):149-60. doi: 10.1007/s12021-008-9024-z. Epub 2008 Oct 23.

12.

Interoperability across neuroscience databases.

Marenco L, Nadkarni P, Martone M, Gupta A.

Methods Mol Biol. 2007;401:23-36. doi: 10.1007/978-1-59745-520-6_2. Review.

PMID:
18368358
13.

The cell centered database project: an update on building community resources for managing and sharing 3D imaging data.

Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH.

J Struct Biol. 2008 Mar;161(3):220-31. Epub 2007 Oct 16.

14.

BiologicalNetworks: visualization and analysis tool for systems biology.

Baitaluk M, Sedova M, Ray A, Gupta A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W466-71.

15.

PathSys: integrating molecular interaction graphs for systems biology.

Baitaluk M, Qian X, Godbole S, Raval A, Ray A, Gupta A.

BMC Bioinformatics. 2006 Feb 7;7:55.

16.

Kinetics of phase separation in systems exhibiting simple coacervation.

Gupta A, Bohidar HB.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jul;72(1 Pt 1):011507. Epub 2005 Jul 26.

PMID:
16089970
17.

Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease.

Grethe JS, Baru C, Gupta A, James M, Ludaescher B, Martone ME, Papadopoulos PM, Peltier ST, Rajasekar A, Santini S, Zaslavsky IN, Ellisman MH.

Stud Health Technol Inform. 2005;112:100-9.

PMID:
15923720
18.

Flory temperature and upper critical solution temperature of gelatin solutions.

Gupta A, Mohanty B, Bohidar HB.

Biomacromolecules. 2005 May-Jun;6(3):1623-7.

PMID:
15877386
19.

E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains.

Martone ME, Gupta A, Ellisman MH.

Nat Neurosci. 2004 May;7(5):467-72.

PMID:
15114360
20.

The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy.

Martone ME, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH.

Neuroinformatics. 2003;1(4):379-95.

PMID:
15043222

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