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Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease.

L'Huillier AG, Brito F, Wagner N, Cordey S, Zdobnov E, Posfay-Barbe KM, Kaiser L.

Front Pediatr. 2019 Dec 19;7:524. doi: 10.3389/fped.2019.00524. eCollection 2019.


Viral Sequences Detection by High-Throughput Sequencing in Cerebrospinal Fluid of Individuals with and without Central Nervous System Disease.

Schibler M, Brito F, Zanella MC, Zdobnov EM, Laubscher F, L'Huillier AG, Ambrosioni J, Wagner N, Posfay-Barbe KM, Docquier M, Schiffer E, Savoldelli GL, Fournier R, Lenggenhager L, Cordey S, Kaiser L.

Genes (Basel). 2019 Aug 19;10(8). pii: E625. doi: 10.3390/genes10080625.


Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank.

Brito F, Cordey S, Delwart E, Deng X, Tirefort D, Lemoine-Chaduc C, Zdobnov E, Lecompte T, Kaiser L, Waldvogel-Abramowski S, Preynat-Seauve O.

Vox Sang. 2018 Jul 18. doi: 10.1111/vox.12695. [Epub ahead of print]


Human pegivirus persistence in human blood virome after allogeneic haematopoietic stem-cell transplantation.

Vu DL, Cordey S, Simonetta F, Brito F, Docquier M, Turin L, van Delden C, Boely E, Dantin C, Pradier A, Roosnek E, Chalandon Y, Zdobnov EM, Masouridi-Levrat S, Kaiser L.

Clin Microbiol Infect. 2019 Feb;25(2):225-232. doi: 10.1016/j.cmi.2018.05.004. Epub 2018 May 19.


Propagation of respiratory viruses in human airway epithelia reveals persistent virus-specific signatures.

Essaidi-Laziosi M, Brito F, Benaoudia S, Royston L, Cagno V, Fernandes-Rocha M, Piuz I, Zdobnov E, Huang S, Constant S, Boldi MO, Kaiser L, Tapparel C.

J Allergy Clin Immunol. 2018 Jun;141(6):2074-2084. doi: 10.1016/j.jaci.2017.07.018. Epub 2017 Aug 8.


Metagenomics analysis of red blood cell and fresh-frozen plasma units.

Lau P, Cordey S, Brito F, Tirefort D, Petty TJ, Turin L, Guichebaron A, Docquier M, Zdobnov EM, Waldvogel-Abramowski S, Lecompte T, Kaiser L, Preynat-Seauve O.

Transfusion. 2017 Jul;57(7):1787-1800. doi: 10.1111/trf.14148. Epub 2017 May 11.


Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology.

Cordey S, Brito F, Vu DL, Turin L, Kilowoko M, Kyungu E, Genton B, Zdobnov EM, D'Acremont V, Kaiser L.

Emerg Microbes Infect. 2016 Sep 7;5(9):e99. doi: 10.1038/emi.2016.98. No abstract available.


Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology.

Cordey S, Brito F, Vu DL, Turin L, Kilowoko M, Kyungu E, Genton B, Zdobnov EM, D'Acremont V, Kaiser L.

Emerg Microbes Infect. 2016 Jul 6;5:e67. doi: 10.1038/emi.2016.67. No abstract available. Erratum in: Emerg Microbes Infect. 2016 Sep 07;5(9):e99.


Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection.

Cordey S, Vu DL, Schibler M, L'Huillier AG, Brito F, Docquier M, Posfay-Barbe KM, Petty TJ, Turin L, Zdobnov EM, Kaiser L.

Emerg Infect Dis. 2016 May;22(5):846-53. doi: 10.3201/eid2205.151807.


Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report.

Schibler M, Vetter P, Cherpillod P, Petty TJ, Cordey S, Vieille G, Yerly S, Siegrist CA, Samii K, Dayer JA, Docquier M, Zdobnov EM, Simpson AJH, Rees PSC, Sarria FB, Gasche Y, Chappuis F, Iten A, Pittet D, Pugin J, Kaiser L.

Lancet Infect Dis. 2015 Sep;15(9):1034-1040. doi: 10.1016/S1473-3099(15)00229-7. Epub 2015 Jul 19.


E119D Neuraminidase Mutation Conferring Pan-Resistance to Neuraminidase Inhibitors in an A(H1N1)pdm09 Isolate From a Stem-Cell Transplant Recipient.

L'Huillier AG, Abed Y, Petty TJ, Cordey S, Thomas Y, Bouhy X, Schibler M, Simon A, Chalandon Y, van Delden C, Zdobnov E, Boquete-Suter P, Boivin G, Kaiser L.

J Infect Dis. 2015 Dec 1;212(11):1726-34. doi: 10.1093/infdis/jiv288. Epub 2015 May 17.


Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses.

Cordey S, Bel M, Petty TJ, Docquier M, Sacco L, Turin L, Cherpillod P, Emonet S, Louis-Simonet M, Zdobnov EM, Ambrosioni J, Kaiser L.

Clin Microbiol Infect. 2015 Apr;21(4):387.e1-4. doi: 10.1016/j.cmi.2014.11.010. Epub 2014 Nov 26.


Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study.

Petty TJ, Cordey S, Padioleau I, Docquier M, Turin L, Preynat-Seauve O, Zdobnov EM, Kaiser L.

J Clin Microbiol. 2014 Sep;52(9):3351-61. doi: 10.1128/JCM.01389-14. Epub 2014 Jul 9.


Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response.

Cosset É, Petty TJ, Dutoit V, Cordey S, Padioleau I, Otten-Hernandez P, Farinelli L, Kaiser L, Bruyère-Cerdan P, Tirefort D, Amar El-Dusouqui S, Nayernia Z, Krause KH, Zdobnov EM, Dietrich PY, Rigal E, Preynat-Seauve O.

Int J Cancer. 2014 Sep 15;135(6):1381-9. doi: 10.1002/ijc.28670. Epub 2014 May 8.


Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections.

Ambrosioni J, Junier T, Delhumeau C, Calmy A, Hirschel B, Zdobnov E, Kaiser L, Yerly S; Swiss HIV Cohort Study.

AIDS. 2012 Oct 23;26(16):2079-86. doi: 10.1097/QAD.0b013e32835805b6.


Identification of site-specific adaptations conferring increased neural cell tropism during human enterovirus 71 infection.

Cordey S, Petty TJ, Schibler M, Martinez Y, Gerlach D, van Belle S, Turin L, Zdobnov E, Kaiser L, Tapparel C.

PLoS Pathog. 2012;8(7):e1002826. doi: 10.1371/journal.ppat.1002826. Epub 2012 Jul 26.


Rhinovirus genome variation during chronic upper and lower respiratory tract infections.

Tapparel C, Cordey S, Junier T, Farinelli L, Van Belle S, Soccal PM, Aubert JD, Zdobnov E, Kaiser L.

PLoS One. 2011;6(6):e21163. doi: 10.1371/journal.pone.0021163. Epub 2011 Jun 21.


Rhinovirus genome evolution during experimental human infection.

Cordey S, Junier T, Gerlach D, Gobbini F, Farinelli L, Zdobnov EM, Winther B, Tapparel C, Kaiser L.

PLoS One. 2010 May 11;5(5):e10588. doi: 10.1371/journal.pone.0010588.


The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection.

Yerly S, Junier T, Gayet-Ageron A, Amari EB, von Wyl V, Günthard HF, Hirschel B, Zdobnov E, Kaiser L; Swiss HIV Cohort Study.

AIDS. 2009 Jul 17;23(11):1415-23. doi: 10.1097/QAD.0b013e32832d40ad.


New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses.

Tapparel C, Junier T, Gerlach D, Van-Belle S, Turin L, Cordey S, Mühlemann K, Regamey N, Aubert JD, Soccal PM, Eigenmann P, Zdobnov E, Kaiser L.

Emerg Infect Dis. 2009 May;15(5):719-26. doi: 10.3201/eid1505.081286.

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