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Items: 1 to 20 of 27


G-Quadruplexes in Human Ribosomal RNA.

Mestre-Fos S, Penev PI, Suttapitugsakul S, Hu M, Ito C, Petrov AS, Wartell RM, Wu R, Williams LD.

J Mol Biol. 2019 Mar 15. pii: S0022-2836(19)30133-0. doi: 10.1016/j.jmb.2019.03.010. [Epub ahead of print]


Improving the accuracy of the nearest neighbor model of DNA melting: Comment on "DNA melting and energetics of the double helix" by Alexander Vologodskii and Maxim D. Frank-Kamenetskii.

Wartell RM.

Phys Life Rev. 2018 Aug;25:22-23. doi: 10.1016/j.plrev.2018.01.014. Epub 2018 Jan 31. No abstract available.


Relationship between calorimetric profiles and differential melting curves for natural DNAs.

Chang CL, Fridman AS, Wartell RM, Hu CK, Lando DY.

Int J Biol Macromol. 2017 Sep;102:591-598. doi: 10.1016/j.ijbiomac.2017.04.048. Epub 2017 Apr 18.


Yeast rRNA Expansion Segments: Folding and Function.

Gómez Ramos LM, Smeekens JM, Kovacs NA, Bowman JC, Wartell RM, Wu R, Williams LD.

J Mol Biol. 2016 Oct 9;428(20):4048-4059. doi: 10.1016/j.jmb.2016.08.008. Epub 2016 Aug 10.


Ligation of RNA Oligomers by the Schistosoma mansoni Hammerhead Ribozyme in Frozen Solution.

Lie L, Biliya S, Vannberg F, Wartell RM.

J Mol Evol. 2016 Mar;82(2-3):81-92. doi: 10.1007/s00239-016-9729-9. Epub 2016 Feb 20.


History of the ribosome and the origin of translation.

Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD.

Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):15396-401. doi: 10.1073/pnas.1509761112. Epub 2015 Nov 30.


Evolution of the ribosome at atomic resolution.

Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10251-6. doi: 10.1073/pnas.1407205111. Epub 2014 Jun 30.


Secondary structures of rRNAs from all three domains of life.

Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD.

PLoS One. 2014 Feb 5;9(2):e88222. doi: 10.1371/journal.pone.0088222. eCollection 2014.


Secondary structure and domain architecture of the 23S and 5S rRNAs.

Petrov AS, Bernier CR, Hershkovits E, Xue Y, Waterbury CC, Hsiao C, Stepanov VG, Gaucher EA, Grover MA, Harvey SC, Hud NV, Wartell RM, Fox GE, Williams LD.

Nucleic Acids Res. 2013 Aug;41(15):7522-35. doi: 10.1093/nar/gkt513. Epub 2013 Jun 14.


RNA with iron(II) as a cofactor catalyses electron transfer.

Hsiao C, Chou IC, Okafor CD, Bowman JC, O'Neill EB, Athavale SS, Petrov AS, Hud NV, Wartell RM, Harvey SC, Williams LD.

Nat Chem. 2013 Jun;5(6):525-8. doi: 10.1038/nchem.1649. Epub 2013 May 19.


Molecular paleontology: a biochemical model of the ancestral ribosome.

Hsiao C, Lenz TK, Peters JK, Fang PY, Schneider DM, Anderson EJ, Preeprem T, Bowman JC, O'Neill EB, Lie L, Athavale SS, Gossett JJ, Trippe C, Murray J, Petrov AS, Wartell RM, Harvey SC, Hud NV, Williams LD.

Nucleic Acids Res. 2013 Mar 1;41(5):3373-85. doi: 10.1093/nar/gkt023. Epub 2013 Jan 25.


RNA folding and catalysis mediated by iron (II).

Athavale SS, Petrov AS, Hsiao C, Watkins D, Prickett CD, Gossett JJ, Lie L, Bowman JC, O'Neill E, Bernier CR, Hud NV, Wartell RM, Harvey SC, Williams LD.

PLoS One. 2012;7(5):e38024. doi: 10.1371/journal.pone.0038024. Epub 2012 May 31.


Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state.

Athavale SS, Gossett JJ, Hsiao C, Bowman JC, O'Neill E, Hershkovitz E, Preeprem T, Hud NV, Wartell RM, Harvey SC, Williams LD.

RNA. 2012 Apr;18(4):752-8. doi: 10.1261/rna.030692.111. Epub 2012 Feb 14.


The influence of Escherichia coli Hfq mutations on RNA binding and sRNA•mRNA duplex formation in rpoS riboregulation.

Updegrove TB, Wartell RM.

Biochim Biophys Acta. 2011 Oct;1809(10):532-40. doi: 10.1016/j.bbagrm.2011.08.006. Epub 2011 Aug 22.


The stoichiometry of the Escherichia coli Hfq protein bound to RNA.

Updegrove TB, Correia JJ, Chen Y, Terry C, Wartell RM.

RNA. 2011 Mar;17(3):489-500. doi: 10.1261/rna.2452111. Epub 2011 Jan 4.


E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domain.

Updegrove TB, Correia JJ, Galletto R, Bujalowski W, Wartell RM.

Biochim Biophys Acta. 2010 Aug;1799(8):588-96. doi: 10.1016/j.bbagrm.2010.06.007. Epub 2010 Jul 7.


Mechanism of RNA double helix-propagation at atomic resolution.

Mohan S, Hsiao C, VanDeusen H, Gallagher R, Krohn E, Kalahar B, Wartell RM, Williams LD.

J Phys Chem B. 2009 Mar 5;113(9):2614-23.


DNA denaturation under freezing in alkaline medium.

Galyuk EN, Wartell RM, Dosin YM, Lando DY.

J Biomol Struct Dyn. 2009 Feb;26(4):517-23.


Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region.

Updegrove T, Wilf N, Sun X, Wartell RM.

Biochemistry. 2008 Oct 28;47(43):11184-95. doi: 10.1021/bi800479p. Epub 2008 Oct 1.


Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda).

Oh TJ, Wartell RM, Cairney J, Pullman GS.

New Phytol. 2008;179(1):67-80. doi: 10.1111/j.1469-8137.2008.02448.x. Epub 2008 Apr 22.

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