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Items: 1 to 20 of 24

1.

The Quantitative Genetic Control of Root Architecture in Maize.

Bray AL, Topp CN.

Plant Cell Physiol. 2018 Jul 18. doi: 10.1093/pcp/pcy141. [Epub ahead of print]

PMID:
30020530
2.

Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.

Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH.

Front Plant Sci. 2018 Apr 25;9:553. doi: 10.3389/fpls.2018.00553. eCollection 2018.

3.

The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology.

Li M, Frank MH, Coneva V, Mio W, Chitwood DH, Topp CN.

Plant Physiol. 2018 Aug;177(4):1382-1395. doi: 10.1104/pp.18.00104. Epub 2018 Jun 5.

4.

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems.

Delory BM, Li M, Topp CN, Lobet G.

F1000Res. 2018 Jan 8;7:22. doi: 10.12688/f1000research.13541.1. eCollection 2018.

5.

Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.

Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, Klein LL, Leiboff S, Li M, Lynch JP, Maizel A, Maloof JN, Markelz RJC, Martinez CC, Miller LA, Mio W, Palubicki W, Poorter H, Pradal C, Price CA, Puttonen E, Reese JB, Rellán-Álvarez R, Spalding EP, Sparks EE, Topp CN, Williams JH, Chitwood DH.

Front Plant Sci. 2017 Jun 9;8:900. doi: 10.3389/fpls.2017.00900. eCollection 2017. Review.

6.

Persistent homology and the branching topologies of plants.

Li M, Duncan K, Topp CN, Chitwood DH.

Am J Bot. 2017 Mar;104(3):349-353. doi: 10.3732/ajb.1700046. Epub 2017 Mar 24. No abstract available.

7.

Hope in Change: The Role of Root Plasticity in Crop Yield Stability.

Topp CN.

Plant Physiol. 2016 Sep;172(1):5-6. doi: 10.1104/pp.16.01257. No abstract available.

8.

The Quest for Understanding Phenotypic Variation via Integrated Approaches in the Field Environment.

Pauli D, Chapman SC, Bart R, Topp CN, Lawrence-Dill CJ, Poland J, Gore MA.

Plant Physiol. 2016 Oct;172(2):622-634. Epub 2016 Aug 1. Review. No abstract available.

9.

How can we harness quantitative genetic variation in crop root systems for agricultural improvement?

Topp CN, Bray AL, Ellis NA, Liu Z.

J Integr Plant Biol. 2016 Mar;58(3):213-25. doi: 10.1111/jipb.12470. Epub 2016 Mar 11. Review.

PMID:
26911925
10.

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics.

Das A, Schneider H, Burridge J, Ascanio AK, Wojciechowski T, Topp CN, Lynch JP, Weitz JS, Bucksch A.

Plant Methods. 2015 Nov 2;11:51. doi: 10.1186/s13007-015-0093-3. eCollection 2015.

11.

DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.

Symonova O, Topp CN, Edelsbrunner H.

PLoS One. 2015 Jun 1;10(6):e0127657. doi: 10.1371/journal.pone.0127657. eCollection 2015.

12.

Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture.

Zurek PR, Topp CN, Benfey PN.

Plant Physiol. 2015 Apr;167(4):1487-96. doi: 10.1104/pp.114.251751. Epub 2015 Feb 11.

13.

Revealing plant cryptotypes: defining meaningful phenotypes among infinite traits.

Chitwood DH, Topp CN.

Curr Opin Plant Biol. 2015 Apr;24:54-60. doi: 10.1016/j.pbi.2015.01.009. Epub 2015 Feb 3. Review.

PMID:
25658908
14.

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.

Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, Benfey PN.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):E1695-704. doi: 10.1073/pnas.1304354110. Epub 2013 Apr 11.

15.

GiA Roots: software for the high throughput analysis of plant root system architecture.

Galkovskyi T, Mileyko Y, Bucksch A, Moore B, Symonova O, Price CA, Topp CN, Iyer-Pascuzzi AS, Zurek PR, Fang S, Harer J, Benfey PN, Weitz JS.

BMC Plant Biol. 2012 Jul 26;12:116. doi: 10.1186/1471-2229-12-116.

16.

Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning.

Gent JI, Schneider KL, Topp CN, Rodriguez C, Presting GG, Dawe RK.

Epigenetics Chromatin. 2011 Feb 25;4:3. doi: 10.1186/1756-8935-4-3.

17.

DNA binding of centromere protein C (CENPC) is stabilized by single-stranded RNA.

Du Y, Topp CN, Dawe RK.

PLoS Genet. 2010 Feb 5;6(2):e1000835. doi: 10.1371/journal.pgen.1000835.

18.

Identification of a maize neocentromere in an oat-maize addition line.

Topp CN, Okagaki RJ, Melo JR, Kynast RG, Phillips RL, Dawe RK.

Cytogenet Genome Res. 2009;124(3-4):228-38. doi: 10.1159/000218128. Epub 2009 Jun 25.

19.

Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z.

Deal RB, Topp CN, McKinney EC, Meagher RB.

Plant Cell. 2007 Jan;19(1):74-83. Epub 2007 Jan 12.

20.

Transformation of rice with long DNA-segments consisting of random genomic DNA or centromere-specific DNA.

Phan BH, Jin W, Topp CN, Zhong CX, Jiang J, Dawe RK, Parrott WA.

Transgenic Res. 2007 Jun;16(3):341-51. Epub 2006 Nov 14.

PMID:
17103243

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