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Incongruence in the phylogenomics era.
Steenwyk JL, Li Y, Zhou X, Shen XX, Rokas A. Steenwyk JL, et al. Nat Rev Genet. 2023 Dec;24(12):834-850. doi: 10.1038/s41576-023-00620-x. Epub 2023 Jun 27. Nat Rev Genet. 2023. PMID: 37369847 Review.
The dawn of relaxed phylogenetics.
Steenwyk JL, Rokas A. Steenwyk JL, et al. PLoS Biol. 2023 Jan 25;21(1):e3001998. doi: 10.1371/journal.pbio.3001998. eCollection 2023 Jan. PLoS Biol. 2023. PMID: 36696649 Free PMC article.
Natural trait variation across Saccharomycotina species.
Wang JJ, Steenwyk JL, Brem RB. Wang JJ, et al. Among authors: steenwyk jl. FEMS Yeast Res. 2024 Jan 9;24:foae002. doi: 10.1093/femsyr/foae002. FEMS Yeast Res. 2024. PMID: 38218591 Free PMC article. Review.
Pathogenic Allodiploid Hybrids of Aspergillus Fungi.
Steenwyk JL, Lind AL, Ries LNA, Dos Reis TF, Silva LP, Almeida F, Bastos RW, Fraga da Silva TFC, Bonato VLD, Pessoni AM, Rodrigues F, Raja HA, Knowles SL, Oberlies NH, Lagrou K, Goldman GH, Rokas A. Steenwyk JL, et al. Curr Biol. 2020 Jul 6;30(13):2495-2507.e7. doi: 10.1016/j.cub.2020.04.071. Epub 2020 Jun 4. Curr Biol. 2020. PMID: 32502407 Free PMC article.
Feature frequency profile-based phylogenies are inaccurate.
Li Y, David KT, Shen XX, Steenwyk JL, Halanych KM, Rokas A. Li Y, et al. Among authors: steenwyk jl. Proc Natl Acad Sci U S A. 2020 Dec 15;117(50):31580-31581. doi: 10.1073/pnas.2013143117. Epub 2020 Nov 24. Proc Natl Acad Sci U S A. 2020. PMID: 33234569 Free PMC article. No abstract available.
A genome-scale phylogeny of the kingdom Fungi.
Li Y, Steenwyk JL, Chang Y, Wang Y, James TY, Stajich JE, Spatafora JW, Groenewald M, Dunn CW, Hittinger CT, Shen XX, Rokas A. Li Y, et al. Among authors: steenwyk jl. Curr Biol. 2021 Apr 26;31(8):1653-1665.e5. doi: 10.1016/j.cub.2021.01.074. Epub 2021 Feb 18. Curr Biol. 2021. PMID: 33607033 Free PMC article.
71 results