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Items: 1 to 20 of 51

1.

The RNA-binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs.

Fasolo F, Patrucco L, Volpe M, Bon C, Peano C, Mignone F, Carninci P, Persichetti F, Santoro C, Zucchelli S, Sblattero D, Sanges R, Cotella D, Gustincich S.

FASEB J. 2019 Oct 25:fj201901618RR. doi: 10.1096/fj.201901618RR. [Epub ahead of print]

2.

A ceRNA circuitry involving the long noncoding RNA Klhl14-AS, Pax8 and Bcl2 drives thyroid carcinogenesis.

Credendino SC, Bellone ML, Lewin N, Amendola E, Sanges R, Basu S, Sepe R, Decaussin-Petrucci M, Tinto N, Fusco A, De Felice M, De Vita G.

Cancer Res. 2019 Sep 26. pii: canres.0039.2019. doi: 10.1158/0008-5472.CAN-19-0039. [Epub ahead of print]

PMID:
31558562
3.

Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes.

Busseni G, Vieira FRJ, Amato A, Pelletier E, Pierella Karlusich JJ, Ferrante MI, Wincker P, Rogato A, Bowler C, Sanges R, Maiorano L, Chiurazzi M, d'Alcalà MR, Caputi L, Iudicone D.

Mol Biol Evol. 2019 Jul 1. pii: msz157. doi: 10.1093/molbev/msz157. [Epub ahead of print]

4.

Identification of sex determination genes and their evolution in Phlebotominae sand flies (Diptera, Nematocera).

Petrella V, Aceto S, Colonna V, Saccone G, Sanges R, Polanska N, Volf P, Gradoni L, Bongiorno G, Salvemini M.

BMC Genomics. 2019 Jun 25;20(1):522. doi: 10.1186/s12864-019-5898-4.

5.

The survey and reference assisted assembly of the Octopus vulgaris genome.

Zarrella I, Herten K, Maes GE, Tai S, Yang M, Seuntjens E, Ritschard EA, Zach M, Styfhals R, Sanges R, Simakov O, Ponte G, Fiorito G.

Sci Data. 2019 Apr 1;6(1):13. doi: 10.1038/s41597-019-0017-6.

6.

In silico Identification and Expression of Protocadherin Gene Family in Octopus vulgaris.

Styfhals R, Seuntjens E, Simakov O, Sanges R, Fiorito G.

Front Physiol. 2019 Jan 14;9:1905. doi: 10.3389/fphys.2018.01905. eCollection 2018.

7.

MRP3 is a sex determining gene in the diatom Pseudo-nitzschia multistriata.

Russo MT, Vitale L, Entrambasaguas L, Anestis K, Fattorini N, Romano F, Minucci C, De Luca P, Biffali E, Vyverman W, Sanges R, Montresor M, Ferrante MI.

Nat Commun. 2018 Nov 28;9(1):5050. doi: 10.1038/s41467-018-07496-0.

8.

ClusterScan: simple and generalistic identification of genomic clusters.

Volpe M, Miralto M, Gustincich S, Sanges R.

Bioinformatics. 2018 Nov 15;34(22):3921-3923. doi: 10.1093/bioinformatics/bty486.

PMID:
29912285
9.

Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi.

Amato A, Sabatino V, Nylund GM, Bergkvist J, Basu S, Andersson MX, Sanges R, Godhe A, Kiørboe T, Selander E, Ferrante MI.

ISME J. 2018 Jun;12(6):1594-1604. doi: 10.1038/s41396-018-0094-0. Epub 2018 Mar 29.

10.

Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse.

Credendino SC, Lewin N, de Oliveira M, Basu S, D'Andrea B, Amendola E, Di Guida L, Nardone A, Sanges R, De Felice M, De Vita G.

Int J Genomics. 2017;2017:9769171. doi: 10.1155/2017/9769171. Epub 2017 Sep 10.

11.

Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus.

Nanjappa D, Sanges R, Ferrante MI, Zingone A.

BMC Genomics. 2017 Oct 23;18(1):813. doi: 10.1186/s12864-017-4210-8.

12.

De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus.

Musacchia F, Vasilev F, Borra M, Biffali E, Sanges R, Santella L, Chun JT.

PLoS One. 2017 Sep 5;12(9):e0184090. doi: 10.1371/journal.pone.0184090. eCollection 2017.

13.

Distribution, Community Composition, and Potential Metabolic Activity of Bacterioplankton in an Urbanized Mediterranean Sea Coastal Zone.

Richa K, Balestra C, Piredda R, Benes V, Borra M, Passarelli A, Margiotta F, Saggiomo M, Biffali E, Sanges R, Scanlan DJ, Casotti R.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e00494-17. doi: 10.1128/AEM.00494-17. Print 2017 Sep 1.

14.

Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions.

Amato A, Dell'Aquila G, Musacchia F, Annunziata R, Ugarte A, Maillet N, Carbone A, Ribera d'Alcalà M, Sanges R, Iudicone D, Ferrante MI.

Sci Rep. 2017 Jun 19;7(1):3826. doi: 10.1038/s41598-017-03741-6.

15.

Genomewide transcriptional reprogramming in the seagrass Cymodocea nodosa under experimental ocean acidification.

Ruocco M, Musacchia F, Olivé I, Costa MM, Barrote I, Santos R, Sanges R, Procaccini G, Silva J.

Mol Ecol. 2017 Aug;26(16):4241-4259. doi: 10.1111/mec.14204. Epub 2017 Jul 10.

PMID:
28614601
16.

Tissue-specific transcriptomic profiling provides new insights into the reproductive ecology and biology of the iconic seagrass species Posidonia oceanica.

Entrambasaguas L, Jahnke M, Biffali E, Borra M, Sanges R, Marín-Guirao L, Procaccini G.

Mar Genomics. 2017 Oct;35:51-61. doi: 10.1016/j.margen.2017.05.006. Epub 2017 May 26.

PMID:
28566222
17.

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

Basu S, Patil S, Mapleson D, Russo MT, Vitale L, Fevola C, Maumus F, Casotti R, Mock T, Caccamo M, Montresor M, Sanges R, Ferrante MI.

New Phytol. 2017 Jul;215(1):140-156. doi: 10.1111/nph.14557. Epub 2017 Apr 21.

18.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.

Nature. 2017 Jan 26;541(7638):536-540. doi: 10.1038/nature20803. Epub 2017 Jan 16.

19.

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome.

Basu S, Hadzhiev Y, Petrosino G, Nepal C, Gehrig J, Armant O, Ferg M, Strahle U, Sanges R, Müller F.

Sci Rep. 2016 Sep 15;6:33210. doi: 10.1038/srep33210.

20.

Multisignal control of expression of the LHCX protein family in the marine diatom Phaeodactylum tricornutum.

Taddei L, Stella GR, Rogato A, Bailleul B, Fortunato AE, Annunziata R, Sanges R, Thaler M, Lepetit B, Lavaud J, Jaubert M, Finazzi G, Bouly JP, Falciatore A.

J Exp Bot. 2016 Jun;67(13):3939-51. doi: 10.1093/jxb/erw198. Epub 2016 May 25.

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