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Accurate and sensitive analysis of minimal residual disease in acute myeloid leukemia using deep sequencing of single nucleotide variations.

Malmberg ED, Rehammar A, Pereira MB, Abrahamsson J, Samuelsson T, Ståhlman S, Asp J, Tierens A, Palmqvist L, Kristiansson E, Fogelstrand L.

J Mol Diagn. 2018 Sep 28. pii: S1525-1578(18)30050-3. doi: 10.1016/j.jmoldx.2018.08.004. [Epub ahead of print]


Minimal residual disease assessed with deep sequencing of NPM1 mutations predicts relapse after allogeneic stem cell transplant in AML.

Delsing Malmberg E, Johansson Alm S, Nicklasson M, Lazarevic V, Ståhlman S, Samuelsson T, Lenhoff S, Asp J, Ehinger M, Palmqvist L, Brune M, Fogelstrand L.

Leuk Lymphoma. 2018 Aug 2:1-9. doi: 10.1080/10428194.2018.1485910. [Epub ahead of print]


Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes.

Padra M, Adamczyk B, Benktander J, Flahou B, Skoog EC, Padra JT, Smet A, Jin C, Ducatelle R, Samuelsson T, Haesebrouck F, Karlsson NG, Teneberg S, Lindén SK.

Virulence. 2018 Dec 31;9(1):898-918. doi: 10.1080/21505594.2018.1460979.


CDK9 and SPT5 proteins are specifically required for expression of herpes simplex virus 1 replication-dependent late genes.

Zhao Z, Tang KW, Muylaert I, Samuelsson T, Elias P.

J Biol Chem. 2017 Sep 15;292(37):15489-15500. doi: 10.1074/jbc.M117.806000. Epub 2017 Jul 25.


Aeromonas salmonicida Growth in Response to Atlantic Salmon Mucins Differs between Epithelial Sites, Is Governed by Sialylated and N-Acetylhexosamine-Containing O-Glycans, and Is Affected by Ca2.

Padra JT, Sundh H, Sundell K, Venkatakrishnan V, Jin C, Samuelsson T, Karlsson NG, Lindén SK.

Infect Immun. 2017 Jul 19;85(8). pii: e00189-17. doi: 10.1128/IAI.00189-17. Print 2017 Aug.


Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next-generation sequencing.

Malmberg EB, Ståhlman S, Rehammar A, Samuelsson T, Alm SJ, Kristiansson E, Abrahamsson J, Garelius H, Pettersson L, Ehinger M, Palmqvist L, Fogelstrand L.

Eur J Haematol. 2017 Jan;98(1):26-37. doi: 10.1111/ejh.12780. Epub 2016 Jun 8.


Searching the Evolutionary Origin of Epithelial Mucus Protein Components-Mucins and FCGBP.

Lang T, Klasson S, Larsson E, Johansson ME, Hansson GC, Samuelsson T.

Mol Biol Evol. 2016 Aug;33(8):1921-36. doi: 10.1093/molbev/msw066. Epub 2016 Apr 4.


Loss of the Mediator subunit Med20 affects transcription of tRNA and other non-coding RNA genes in fission yeast.

Carlsten JO, Zhu X, López MD, Samuelsson T, Gustafsson CM.

Biochim Biophys Acta. 2016 Feb;1859(2):339-47. doi: 10.1016/j.bbagrm.2015.11.007. Epub 2015 Nov 19.


Evolution, diversification, and expression of KNOX proteins in plants.

Gao J, Yang X, Zhao W, Lang T, Samuelsson T.

Front Plant Sci. 2015 Oct 23;6:882. doi: 10.3389/fpls.2015.00882. eCollection 2015.


Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans.

Dumesic PA, Rosenblad MA, Samuelsson T, Nguyen T, Moresco JJ, Yates JR 3rd, Madhani HD.

Nucleic Acids Res. 2015 Oct 15;43(18):9017-27. doi: 10.1093/nar/gkv819. Epub 2015 Aug 14.


Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element.

Jemt E, Persson Ö, Shi Y, Mehmedovic M, Uhler JP, Dávila López M, Freyer C, Gustafsson CM, Samuelsson T, Falkenberg M.

Nucleic Acids Res. 2015 Oct 30;43(19):9262-75. doi: 10.1093/nar/gkv804. Epub 2015 Aug 7.


Simultaneous DNA and RNA Mapping of Somatic Mitochondrial Mutations across Diverse Human Cancers.

Stewart JB, Alaei-Mahabadi B, Sabarinathan R, Samuelsson T, Gorodkin J, Gustafsson CM, Larsson E.

PLoS Genet. 2015 Jun 30;11(6):e1005333. doi: 10.1371/journal.pgen.1005333. eCollection 2015 Jun.


Zebrafish as a model to study live mucus physiology.

Jevtov I, Samuelsson T, Yao G, Amsterdam A, Ribbeck K.

Sci Rep. 2014 Oct 17;4:6653. doi: 10.1038/srep06653.


The UbL protein UBTD1 stably interacts with the UBE2D family of E2 ubiquitin conjugating enzymes.

Uhler JP, Spåhr H, Farge G, Clavel S, Larsson NG, Falkenberg M, Samuelsson T, Gustafsson CM.

Biochem Biophys Res Commun. 2014 Jan 3;443(1):7-12. doi: 10.1016/j.bbrc.2013.10.137. Epub 2013 Nov 6.


The landscape of viral expression and host gene fusion and adaptation in human cancer.

Tang KW, Alaei-Mahabadi B, Samuelsson T, Lindh M, Larsson E.

Nat Commun. 2013;4:2513. doi: 10.1038/ncomms3513.


In vivo mutagenesis reveals that OriL is essential for mitochondrial DNA replication.

Wanrooij S, Miralles Fusté J, Stewart JB, Wanrooij PH, Samuelsson T, Larsson NG, Gustafsson CM, Falkenberg M.

EMBO Rep. 2012 Dec;13(12):1130-7. doi: 10.1038/embor.2012.161. Epub 2012 Oct 23.


RNAcentral: A vision for an international database of RNA sequences.

Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.

RNA. 2011 Nov;17(11):1941-6. doi: 10.1261/rna.2750811. Epub 2011 Sep 22.


eGOB: eukaryotic Gene Order Browser.

López MD, Samuelsson T.

Bioinformatics. 2011 Apr 15;27(8):1150-1. doi: 10.1093/bioinformatics/btr075. Epub 2011 Feb 10.


LRPPRC is a mitochondrial matrix protein that is conserved in metazoans.

Sterky FH, Ruzzenente B, Gustafsson CM, Samuelsson T, Larsson NG.

Biochem Biophys Res Commun. 2010 Aug 6;398(4):759-64. doi: 10.1016/j.bbrc.2010.07.019. Epub 2010 Jul 13.


Analysis of gene order conservation in eukaryotes identifies transcriptionally and functionally linked genes.

Dávila López M, Martínez Guerra JJ, Samuelsson T.

PLoS One. 2010 May 14;5(5):e10654. doi: 10.1371/journal.pone.0010654.

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