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Items: 1 to 20 of 24

1.

Sternopygus macrurus electric organ transcriptome and cell size exhibit insensitivity to short-term electrical inactivity.

Güth R, Pinch M, Samanta MP, Chaidez A, Unguez GA.

J Physiol Paris. 2016 Oct;110(3 Pt B):233-244. doi: 10.1016/j.jphysparis.2016.11.005. Epub 2016 Nov 15.

2.

Properties of skeletal muscle in the teleost Sternopygus macrurus are unaffected by short-term electrical inactivity.

Güth R, Chaidez A, Samanta MP, Unguez GA.

Physiol Genomics. 2016 Sep 1;48(9):699-710. doi: 10.1152/physiolgenomics.00068.2016. Epub 2016 Jul 22.

3.

More Questions than Answers: Continued Critical Reanalysis of Fredrickson et al.'s Studies of Genomics and Well-Being.

Brown NJ, MacDonald DA, Samanta MP, Friedman HL, Coyne JC.

PLoS One. 2016 Jun 7;11(6):e0156415. doi: 10.1371/journal.pone.0156415. eCollection 2016. Review.

4.

The myogenic electric organ of Sternopygus macrurus: a non-contractile tissue with a skeletal muscle transcriptome.

Pinch M, Güth R, Samanta MP, Chaidez A, Unguez GA.

PeerJ. 2016 Apr 14;4:e1828. doi: 10.7717/peerj.1828. eCollection 2016.

5.

Sequence Analysis and Comparative Study of the Protein Subunits of Archaeal RNase P.

Samanta MP, Lai SM, Daniels CJ, Gopalan V.

Biomolecules. 2016 Apr 20;6(2). pii: E22. doi: 10.3390/biom6020022. Review.

6.

Saccular Transcriptome Profiles of the Seasonal Breeding Plainfin Midshipman Fish (Porichthys notatus), a Teleost with Divergent Sexual Phenotypes.

Faber-Hammond J, Samanta MP, Whitchurch EA, Manning D, Sisneros JA, Coffin AB.

PLoS One. 2015 Nov 11;10(11):e0142814. doi: 10.1371/journal.pone.0142814. eCollection 2015.

7.

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds.

Hedgecock D, Shin G, Gracey AY, Den Berg DV, Samanta MP.

G3 (Bethesda). 2015 Aug 6;5(10):2007-19. doi: 10.1534/g3.115.019570.

8.

Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus).

Traeger LL, Volkening JD, Moffett H, Gallant JR, Chen PH, Novina CD, Phillips GN Jr, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon H, Sussman MR, Samanta MP.

BMC Genomics. 2015 Mar 26;16:243. doi: 10.1186/s12864-015-1288-8.

9.

A critical reanalysis of the relationship between genomics and well-being.

Brown NJ, MacDonald DA, Samanta MP, Friedman HL, Coyne JC.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12705-9. doi: 10.1073/pnas.1407057111. Epub 2014 Aug 25.

10.

Nonhuman genetics. Genomic basis for the convergent evolution of electric organs.

Gallant JR, Traeger LL, Volkening JD, Moffett H, Chen PH, Novina CD, Phillips GN Jr, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon HH, Samanta MP, Sussman MR.

Science. 2014 Jun 27;344(6191):1522-5. doi: 10.1126/science.1254432.

11.

Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis.

Luo QJ, Samanta MP, Köksal F, Janda J, Galbraith DW, Richardson CR, Ou-Yang F, Rock CD.

PLoS Genet. 2009 Apr;5(4):e1000457. doi: 10.1371/journal.pgen.1000457. Epub 2009 Apr 17.

12.

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses.

Mock T, Samanta MP, Iverson V, Berthiaume C, Robison M, Holtermann K, Durkin C, Bondurant SS, Richmond K, Rodesch M, Kallas T, Huttlin EL, Cerrina F, Sussman MR, Armbrust EV.

Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1579-84. doi: 10.1073/pnas.0707946105. Epub 2008 Jan 22.

13.

In-depth query of large genomes using tiling arrays.

Samanta MP, Tongprasit W, Stolc V.

Methods Mol Biol. 2007;377:163-74. Review.

PMID:
17634616
14.

Identification of an in vitro transcription-based artifact affecting oligonucleotide microarrays.

Nelson DC, Wohlbach DJ, Rodesch MJ, Stolc V, Sussman MR, Samanta MP.

FEBS Lett. 2007 Jul 24;581(18):3363-70. Epub 2007 Jun 26.

15.

Computational and transcriptional evidence for microRNAs in the honey bee genome.

Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG.

Genome Biol. 2007;8(6):R97.

16.

The transcriptome of the sea urchin embryo.

Samanta MP, Tongprasit W, Istrail S, Cameron RA, Tu Q, Davidson EH, Stolc V.

Science. 2006 Nov 10;314(5801):960-2.

17.

The genome of the sea urchin Strongylocentrotus purpuratus.

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R.

Science. 2006 Nov 10;314(5801):941-52. Erratum in: Science. 2007 Feb 9;315(5813):766.

18.

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4192-7. Epub 2006 Mar 6.

19.

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4453-8. Epub 2005 Mar 8.

20.

Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes.

Stolc V, Samanta MP, Tongprasit W, Marshall WF.

Proc Natl Acad Sci U S A. 2005 Mar 8;102(10):3703-7. Epub 2005 Feb 28.

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