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Items: 1 to 20 of 110

1.

TIMING 2.0: High-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell grids.

Lu H, Li J, Martinez Paniagua MA, Bandey IN, Amritkar A, Singh H, Mayerich D, Varadarajan N, Roysam B.

Bioinformatics. 2018 Aug 1. doi: 10.1093/bioinformatics/bty676. [Epub ahead of print]

PMID:
30084956
2.

Single-cell profiling of dynamic cytokine secretion and the phenotype of immune cells.

An X, Sendra VG, Liadi I, Ramesh B, Romain G, Haymaker C, Martinez-Paniagua M, Lu Y, Radvanyi LG, Roysam B, Varadarajan N.

PLoS One. 2017 Aug 24;12(8):e0181904. doi: 10.1371/journal.pone.0181904. eCollection 2017.

3.

Placing Sites on the Edge of Planar Silicon Microelectrodes Enhances Chronic Recording Functionality.

Lee HC, Gaire J, Roysam B, Otto KJ.

IEEE Trans Biomed Eng. 2018 Jun;65(6):1245-1255. doi: 10.1109/TBME.2017.2715811. Epub 2017 Jun 15.

PMID:
28641240
4.

Morphologically constrained spectral unmixing by dictionary learning for multiplex fluorescence microscopy.

Megjhani M, Correa de Sampaio P, Leigh Carstens J, Kalluri R, Roysam B.

Bioinformatics. 2017 Jul 15;33(14):2182-2190. doi: 10.1093/bioinformatics/btx108.

5.

Binge alcohol alters exercise-driven neuroplasticity.

Barton EA, Lu Y, Megjhani M, Maynard ME, Kulkarni PM, Roysam B, Leasure JL.

Neuroscience. 2017 Feb 20;343:165-173. doi: 10.1016/j.neuroscience.2016.11.041. Epub 2016 Dec 5.

6.

Unsupervised Discovery of Subspace Trends.

Xu Y, Qiu P, Roysam B.

IEEE Trans Pattern Anal Mach Intell. 2015 Oct;37(10):2131-45. doi: 10.1109/TPAMI.2015.2394475.

PMID:
26353189
7.

Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).

Merouane A, Rey-Villamizar N, Lu Y, Liadi I, Romain G, Lu J, Singh H, Cooper LJ, Varadarajan N, Roysam B.

Bioinformatics. 2015 Oct 1;31(19):3189-97. doi: 10.1093/bioinformatics/btv355. Epub 2015 Jun 9.

8.

Quantitative 3-D analysis of GFAP labeled astrocytes from fluorescence confocal images.

Kulkarni PM, Barton E, Savelonas M, Padmanabhan R, Lu Y, Trett K, Shain W, Leasure JL, Roysam B.

J Neurosci Methods. 2015 May 15;246:38-51. doi: 10.1016/j.jneumeth.2015.02.014. Epub 2015 Mar 5.

PMID:
25745860
9.

Individual Motile CD4(+) T Cells Can Participate in Efficient Multikilling through Conjugation to Multiple Tumor Cells.

Liadi I, Singh H, Romain G, Rey-Villamizar N, Merouane A, Adolacion JR, Kebriaei P, Huls H, Qiu P, Roysam B, Cooper LJ, Varadarajan N.

Cancer Immunol Res. 2015 May;3(5):473-82. doi: 10.1158/2326-6066.CIR-14-0195. Epub 2015 Feb 24.

10.

Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors.

Megjhani M, Rey-Villamizar N, Merouane A, Lu Y, Mukherjee A, Trett K, Chong P, Harris C, Shain W, Roysam B.

Bioinformatics. 2015 Jul 1;31(13):2190-8. doi: 10.1093/bioinformatics/btv109. Epub 2015 Feb 19.

11.

Algorithms for improved 3-D reconstruction of live mammalian embryo vasculature from optical coherence tomography data.

Kulkarni PM, Rey-Villamizar N, Merouane A, Sudheendran N, Wang S, Garcia M, Larina IV, Roysam B, Larin KV.

Quant Imaging Med Surg. 2015 Feb;5(1):125-35. doi: 10.3978/j.issn.2223-4292.2014.11.33.

12.

Antibody Fc engineering improves frequency and promotes kinetic boosting of serial killing mediated by NK cells.

Romain G, Senyukov V, Rey-Villamizar N, Merouane A, Kelton W, Liadi I, Mahendra A, Charab W, Georgiou G, Roysam B, Lee DA, Varadarajan N.

Blood. 2014 Nov 20;124(22):3241-9. doi: 10.1182/blood-2014-04-569061. Epub 2014 Sep 16.

13.

Quantitative arbor analytics: unsupervised harmonic co-clustering of populations of brain cell arbors based on L-measure.

Lu Y, Carin L, Coifman R, Shain W, Roysam B.

Neuroinformatics. 2015 Jan;13(1):47-63. doi: 10.1007/s12021-014-9237-2.

PMID:
25086878
14.

Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python.

Rey-Villamizar N, Somasundar V, Megjhani M, Xu Y, Lu Y, Padmanabhan R, Trett K, Shain W, Roysam B.

Front Neuroinform. 2014 Apr 29;8:39. doi: 10.3389/fninf.2014.00039. eCollection 2014.

15.

An active learning approach for rapid characterization of endothelial cells in human tumors.

Padmanabhan RK, Somasundar VH, Griffith SD, Zhu J, Samoyedny D, Tan KS, Hu J, Liao X, Carin L, Yoon SS, Flaherty KT, Dipaola RS, Heitjan DF, Lal P, Feldman MD, Roysam B, Lee WM.

PLoS One. 2014 Mar 6;9(3):e90495. doi: 10.1371/journal.pone.0090495. eCollection 2014.

16.

Automated image computing reshapes computational neuroscience.

Peng H, Roysam B, Ascoli GA.

BMC Bioinformatics. 2013 Oct 4;14:293. doi: 10.1186/1471-2105-14-293.

17.

Preexisting epithelial diversity in normal human livers: a tissue-tethered cytometric analysis in portal/periportal epithelial cells.

Isse K, Lesniak A, Grama K, Maier J, Specht S, Castillo-Rama M, Lunz J, Roysam B, Michalopoulos G, Demetris AJ.

Hepatology. 2013 Apr;57(4):1632-43. doi: 10.1002/hep.26131. Epub 2013 Mar 19.

18.

Biological imaging software tools.

Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Erratum in: Nat Methods. 2012 Oct;9(10):1031. Stuurmann, Nico [corrected to Stuurman, Nico].

19.

NetMets: software for quantifying and visualizing errors in biological network segmentation.

Mayerich D, Bjornsson C, Taylor J, Roysam B.

BMC Bioinformatics. 2012;13 Suppl 8:S7. doi: 10.1186/1471-2105-13-S8-S7. Epub 2012 May 18.

20.

Serial section registration of axonal confocal microscopy datasets for long-range neural circuit reconstruction.

Hogrebe L, Paiva AR, Jurrus E, Christensen C, Bridge M, Dai L, Pfeiffer RL, Hof PR, Roysam B, Korenberg JR, Tasdizen T.

J Neurosci Methods. 2012 Jun 15;207(2):200-10. doi: 10.1016/j.jneumeth.2012.03.002. Epub 2012 Mar 28.

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