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Items: 1 to 20 of 370


Bringing the Dynamic Microbiome to Life with Animations.

Vázquez-Baeza Y, Gonzalez A, Smarr L, McDonald D, Morton JT, Navas-Molina JA, Knight R.

Cell Host Microbe. 2017 Jan 11;21(1):7-10. doi: 10.1016/j.chom.2016.12.009.


Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation.

Schall KA, Holoyda KA, Isani M, Schlieve C, Salisbury T, Khuu T, Debelius JW, Moats RA, Pollack HA, Lien CL, Fowler K, Hou X, Knight R, Grikscheit TC.

Surgery. 2016 Dec 20. pii: S0039-6060(16)30730-9. doi: 10.1016/j.surg.2016.10.033. [Epub ahead of print]


Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk.

Bergeron N, Williams PT, Lamendella R, Faghihnia N, Grube A, Li X, Wang Z, Knight R, Jansson JK, Hazen SL, Krauss RM.

Br J Nutr. 2016 Dec;116(12):2020-2029. doi: 10.1017/S0007114516004165.


Comparison of Collection Methods for Fecal Samples in Microbiome Studies.

Vogtmann E, Chen J, Amir A, Shi J, Abnet CC, Nelson H, Knight R, Chia N, Sinha R.

Am J Epidemiol. 2017 Jan 15;185(2):115-123. doi: 10.1093/aje/kww177.


Antibiotic discovery is a walk in the park.

Nothias LF, Knight R, Dorrestein PC.

Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14477-14479. doi: 10.1073/pnas.1618221114. No abstract available.


Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease.

Sampson TR, Debelius JW, Thron T, Janssen S, Shastri GG, Ilhan ZE, Challis C, Schretter CE, Rocha S, Gradinaru V, Chesselet MF, Keshavarzian A, Shannon KM, Krajmalnik-Brown R, Wittung-Stafshede P, Knight R, Mazmanian SK.

Cell. 2016 Dec 1;167(6):1469-1480.e12. doi: 10.1016/j.cell.2016.11.018.


Multiplex growth rate phenotyping of synthetic mutants in selection to engineer glucose and xylose co-utilization in Escherichia coli.

Groot J, Cepress-Mclean SC, Robbins-Pianka A, Knight R, Gill RT.

Biotechnol Bioeng. 2016 Nov 14. doi: 10.1002/bit.26217. [Epub ahead of print]


Lifestyle chemistries from phones for individual profiling.

Bouslimani A, Melnik AV, Xu Z, Amir A, da Silva RR, Wang M, Bandeira N, Alexandrov T, Knight R, Dorrestein PC.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7645-E7654.


mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking.

Bokulich NA, Rideout JR, Mercurio WG, Shiffer A, Wolfe B, Maurice CF, Dutton RJ, Turnbaugh PJ, Knight R, Caporaso JG.

mSystems. 2016 Oct 18;1(5). pii: e00062-16.


The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat.

Hyde ER, Navas-Molina JA, Song SJ, Kueneman JG, Ackermann G, Cardona C, Humphrey G, Boyer D, Weaver T, Mendelson JR 3rd, McKenzie VJ, Gilbert JA, Knight R.

mSystems. 2016 Aug 2;1(4). pii: e00046-16.


Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies.

Song SJ, Amir A, Metcalf JL, Amato KR, Xu ZZ, Humphrey G, Knight R.

mSystems. 2016 May 3;1(3). pii: e00021-16.


From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16.


Geography and Location Are the Primary Drivers of Office Microbiome Composition.

Chase J, Fouquier J, Zare M, Sonderegger DL, Knight R, Kelley ST, Siegel J, Caporaso JG.

mSystems. 2016 Apr 19;1(2). pii: e00022-16.


Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.

Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R.

mSystems. 2015 Dec 22;1(1). pii: e00009-15.


Open-Source Sequence Clustering Methods Improve the State Of the Art.

Kopylova E, Navas-Molina JA, Mercier C, Xu ZZ, Mahé F, He Y, Zhou HW, Rognes T, Caporaso JG, Knight R.

mSystems. 2016 Feb 9;1(1). pii: e00003-15.


Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies.

Loftfield E, Vogtmann E, Sampson JN, Moore SC, Nelson H, Knight R, Chia N, Sinha R.

Cancer Epidemiol Biomarkers Prev. 2016 Nov;25(11):1483-1490.


Let researchers try new paths.

Oni T, Sciarrino F, Adesso G, Knight R.

Nature. 2016 Oct 27;538(7626):451-453. doi: 10.1038/538451a. No abstract available.


Prevalence and genetic diversity of Blastocystis in family units living in the United States.

Scanlan PD, Knight R, Song SJ, Ackermann G, Cotter PD.

Infect Genet Evol. 2016 Nov;45:95-97. doi: 10.1016/j.meegid.2016.08.018.


Tiny microbes, enormous impacts: what matters in gut microbiome studies?

Debelius J, Song SJ, Vazquez-Baeza Y, Xu ZZ, Gonzalez A, Knight R.

Genome Biol. 2016 Oct 19;17(1):217. Review.

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