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Items: 1 to 20 of 522

1.

Gut microbiota in wild and captive Guizhou snub-nosed monkeys, Rhinopithecus brelichi.

Hale VL, Tan CL, Niu K, Yang Y, Zhang Q, Knight R, Amato KR.

Am J Primatol. 2019 May 20:e22989. doi: 10.1002/ajp.22989. [Epub ahead of print]

PMID:
31106872
2.

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults.

de la Cuesta-Zuluaga J, Kelley ST, Chen Y, Escobar JS, Mueller NT, Ley RE, McDonald D, Huang S, Swafford AD, Knight R, Thackray VG.

mSystems. 2019 May 14;4(4). pii: e00261-19. doi: 10.1128/mSystems.00261-19. eCollection 2019 Jul-Aug.

3.

Trait-like vulnerability of higher-order cognition and ability to maintain wakefulness during combined sleep restriction and circadian misalignment.

Sprecher KE, Ritchie HK, Burke TM, Depner CM, Smits AN, Dorrestein PC, Fleshner M, Knight R, Lowry CA, Turek FW, Vitaterna MH, Wright KP Jr.

Sleep. 2019 May 9. pii: zsz113. doi: 10.1093/sleep/zsz113. [Epub ahead of print]

PMID:
31070769
4.

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems.

Tripathi A, Xu ZZ, Xue J, Poulsen O, Gonzalez A, Humphrey G, Meehan MJ, Melnik AV, Ackermann G, Zhou D, Malhotra A, Haddad GG, Dorrestein PC, Knight R.

mSystems. 2019 Apr 30;4(2). pii: e00058-19. doi: 10.1128/mSystems.00058-19. eCollection 2019 Mar-Apr.

5.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
6.

Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media.

Poudel S, Tsunemoto H, Meehan M, Szubin R, Olson CA, Lamsa A, Seif Y, Dillon N, Vrbanac A, Sugie J, Dahesh S, Monk JM, Dorrestein PC, Pogliano J, Knight R, Nizet V, Palsson BO, Feist AM.

Sci Data. 2019 Apr 26;6(1):43. doi: 10.1038/s41597-019-0051-4.

7.

Red Sea SAR11 and Prochlorococcus Single-cell Genomes Reflect Globally Distributed Pangenomes.

Thompson LR, Haroon MF, Shibl AA, Cahill MJ, Ngugi DK, Williams GJ, Morton JT, Knight R, Goodwin KD, Stingl U.

Appl Environ Microbiol. 2019 Apr 26. pii: AEM.00369-19. doi: 10.1128/AEM.00369-19. [Epub ahead of print]

8.

Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces.

Checinska Sielaff A, Urbaniak C, Mohan GBM, Stepanov VG, Tran Q, Wood JM, Minich J, McDonald D, Mayer T, Knight R, Karouia F, Fox GE, Venkateswaran K.

Microbiome. 2019 Apr 8;7(1):50. doi: 10.1186/s40168-019-0666-x.

9.

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease.

Caussy C, Tripathi A, Humphrey G, Bassirian S, Singh S, Faulkner C, Bettencourt R, Rizo E, Richards L, Xu ZZ, Downes MR, Evans RM, Brenner DA, Sirlin CB, Knight R, Loomba R.

Nat Commun. 2019 Mar 29;10(1):1406. doi: 10.1038/s41467-019-09455-9.

10.

Major shifts in gut microbiota during development and its relationship to growth in ostriches.

Videvall E, Song SJ, Bensch HM, Strandh M, Engelbrecht A, Serfontein N, Hellgren O, Olivier A, Cloete S, Knight R, Cornwallis CK.

Mol Ecol. 2019 Mar 27. doi: 10.1111/mec.15087. [Epub ahead of print]

PMID:
30916826
11.

The genetic basis for adaptation of model-designed syntrophic co-cultures.

Lloyd CJ, King ZA, Sandberg TE, Hefner Y, Olson CA, Phaneuf PV, O'Brien EJ, Sanders JG, Salido RA, Sanders K, Brennan C, Humphrey G, Knight R, Feist AM.

PLoS Comput Biol. 2019 Mar 1;15(3):e1006213. doi: 10.1371/journal.pcbi.1006213. eCollection 2019 Mar.

12.

Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month.

Iszatt N, Janssen S, Lenters V, Dahl C, Stigum H, Knight R, Mandal S, Peddada S, González A, Midtvedt T, Eggesbø M.

Microbiome. 2019 Feb 27;7(1):34. doi: 10.1186/s40168-019-0645-2.

13.

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease.

Mills RH, Vázquez-Baeza Y, Zhu Q, Jiang L, Gaffney J, Humphrey G, Smarr L, Knight R, Gonzalez DJ.

mSystems. 2019 Feb 12;4(1). pii: e00337-18. doi: 10.1128/mSystems.00337-18. eCollection 2019 Jan-Feb.

14.

A Novel Sparse Compositional Technique Reveals Microbial Perturbations.

Martino C, Morton JT, Marotz CA, Thompson LR, Tripathi A, Knight R, Zengler K.

mSystems. 2019 Feb 12;4(1). pii: e00016-19. doi: 10.1128/mSystems.00016-19. eCollection 2019 Jan-Feb.

15.

FXR Regulates Intestinal Cancer Stem Cell Proliferation.

Fu T, Coulter S, Yoshihara E, Oh TG, Fang S, Cayabyab F, Zhu Q, Zhang T, Leblanc M, Liu S, He M, Waizenegger W, Gasser E, Schnabl B, Atkins AR, Yu RT, Knight R, Liddle C, Downes M, Evans RM.

Cell. 2019 Feb 21;176(5):1098-1112.e18. doi: 10.1016/j.cell.2019.01.036.

PMID:
30794774
16.

Engineering the microbiome for animal health and conservation.

Jin Song S, Woodhams DC, Martino C, Allaband C, Mu A, Javorschi-Miller-Montgomery S, Suchodolski JS, Knight R.

Exp Biol Med (Maywood). 2019 Apr;244(6):494-504. doi: 10.1177/1535370219830075. Epub 2019 Feb 18.

PMID:
30776908
17.

Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome.

Quinn RA, Adem S, Mills RH, Comstock W, DeRight Goldasich L, Humphrey G, Aksenov AA, Melnik AV, da Silva R, Ackermann G, Bandeira N, Gonzalez DJ, Conrad D, O'Donoghue AJ, Knight R, Dorrestein PC.

Microbiome. 2019 Feb 13;7(1):23. doi: 10.1186/s40168-019-0636-3.

18.

Reply to Moossavi and Azad, "Quantifying and Interpreting the Association between Early-Life Gut Microbiota Composition and Childhood Obesity".

Stanislawski MA, Dabelea D, Wagner BD, Iszatt N, Dahl C, Sontag MK, Knight R, Lozupone CA, Eggesbø M.

MBio. 2019 Feb 12;10(1). pii: e00047-19. doi: 10.1128/mBio.00047-19. No abstract available.

19.

Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice.

Brunt VE, Gioscia-Ryan RA, Richey JJ, Zigler MC, Cuevas LM, Gonzalez A, Vázquez-Baeza Y, Battson ML, Smithson AT, Gilley AD, Ackermann G, Neilson AP, Weir T, Davy KP, Knight R, Seals DR.

J Physiol. 2019 May;597(9):2361-2378. doi: 10.1113/JP277336. Epub 2019 Feb 27.

PMID:
30714619
20.

Calour: an Interactive, Microbe-Centric Analysis Tool.

Xu ZZ, Amir A, Sanders J, Zhu Q, Morton JT, Bletz MC, Tripathi A, Huang S, McDonald D, Jiang L, Knight R.

mSystems. 2019 Jan 29;4(1). pii: e00269-18. doi: 10.1128/mSystems.00269-18. eCollection 2019 Jan-Feb.

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