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Items: 5

1.

Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.

Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S.

J Proteome Res. 2014 Jan 3;13(1):76-83. doi: 10.1021/pr400794x. Epub 2013 Dec 13.

PMID:
24313344
2.

A peptide-spectrum scoring system based on ion alignment, intensity, and pair probabilities.

Risk BA, Edwards NJ, Giddings MC.

J Proteome Res. 2013 Sep 6;12(9):4240-7. doi: 10.1021/pr400286p. Epub 2013 Aug 8.

3.

Peppy: proteogenomic search software.

Risk BA, Spitzer WJ, Giddings MC.

J Proteome Res. 2013 Jun 7;12(6):3019-25. doi: 10.1021/pr400208w. Epub 2013 May 6.

4.

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions.

Khatun J, Yu Y, Wrobel JA, Risk BA, Gunawardena HP, Secrest A, Spitzer WJ, Xie L, Wang L, Chen X, Giddings MC.

BMC Genomics. 2013 Feb 28;14:141. doi: 10.1186/1471-2164-14-141.

5.

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium.

Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.

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