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Best matches for RNA-seq:

RNA-Seq technology and its application in fish transcriptomics. Qian X et al. OMICS. (2014)

Mapping RNA-seq Reads with STAR. Dobin A et al. Curr Protoc Bioinformatics. (2015)

Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq. Wade JT et al. Adv Exp Med Biol. (2015)

Search results

Items: 1 to 20 of 13461

1.

Genomic approaches for the elucidation of genes and gene networks underlying cardiovascular traits.

Adriaens ME, Bezzina CR.

Biophys Rev. 2018 Jun 22. doi: 10.1007/s12551-018-0435-2. [Epub ahead of print] Review.

PMID:
29934864
2.

Transcriptome analysis for identifying possible gene regulations during maize root emergence and formation at the initial growth stage.

Hwang SG, Kim KH, Lee BM, Moon JC.

Genes Genomics. 2018 Jul;40(7):755-766. doi: 10.1007/s13258-018-0687-z. Epub 2018 Apr 7.

PMID:
29934814
3.

Genetic structure of six cattle populations revealed by transcriptome-wide SNPs and gene expression.

Wang W, Wang H, Tang H, Gan J, Shi C, Lu Q, Fang D, Yi J, Fu M.

Genes Genomics. 2018 Jul;40(7):715-724. doi: 10.1007/s13258-018-0677-1. Epub 2018 Mar 26.

PMID:
29934811
4.

Analysis of sensitive information leakage in functional genomics signal profiles through genomic deletions.

Harmanci A, Gerstein M.

Nat Commun. 2018 Jun 22;9(1):2453. doi: 10.1038/s41467-018-04875-5.

PMID:
29934598
5.

Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx.

Hensel KO, Cantner F, Bangert F, Wirth S, Postberg J.

Epigenetics Chromatin. 2018 Jun 22;11(1):34. doi: 10.1186/s13072-018-0204-2.

PMID:
29933745
6.

Decryption of Active Constituents and Action Mechanism of the Traditional Uighur Prescription (BXXTR) Alleviating IMQ-Induced Psoriasis-Like Skin Inflammation in BALB/c Mice.

Pang X, Zhang K, Huang J, Wang H, Gao L, Wang T, Sun Y, Chen L, Wang J.

Int J Mol Sci. 2018 Jun 21;19(7). pii: E1822. doi: 10.3390/ijms19071822.

PMID:
29933541
7.

RNA-seq based transcriptome analysis of the protective effect of compound longmaining decoction on acute myocardial infarction.

Wang C, Bai X, Liu S, Wang J, Su Z, Zhang W, Bu D, Yan Y, Song X.

J Pharm Biomed Anal. 2018 Jun 18;158:339-345. doi: 10.1016/j.jpba.2018.06.016. [Epub ahead of print]

PMID:
29933226
8.

Transcriptomic study on persistence and survival of Listeria monocytogenes following lethal treatment with Nisin.

Wu S, Yu PL, Wheeler D, Flint S.

J Glob Antimicrob Resist. 2018 Jun 19. pii: S2213-7165(18)30113-9. doi: 10.1016/j.jgar.2018.06.003. [Epub ahead of print]

PMID:
29933119
9.

RNAi-mediated SLC7A11 knockdown inhibits melanogenesis-related genes expression in rabbit skin fibroblasts.

Yang N, Mu L, Zhao B, Wang M, Hu S, Zhao B, Chen Y, Wu X.

J Genet. 2018 Jun;97(2):463-468.

PMID:
29932066
10.
11.

Identification of NBS-encoding genes linked to black rot resistance in cabbage (Brassica oleracea var. capitata).

Afrin KS, Rahim MA, Park JI, Natarajan S, Kim HT, Nou IS.

Mol Biol Rep. 2018 Jun 21. doi: 10.1007/s11033-018-4217-5. [Epub ahead of print]

PMID:
29931534
12.

RBPJ binds to consensus and methylated cis elements within phased nucleosomes and controls gene expression in human aortic smooth muscle cells in cooperation with SRF.

Rozenberg JM, Taylor JM, Mack CP.

Nucleic Acids Res. 2018 Jun 21. doi: 10.1093/nar/gky562. [Epub ahead of print]

PMID:
29931229
13.

Estimating pseudocounts and fold changes for digital expression measurements.

Erhard F.

Bioinformatics. 2018 Jun 19. doi: 10.1093/bioinformatics/bty471. [Epub ahead of print]

PMID:
29931226
14.

RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins.

Li J, Deng SP, Vieira J, Thomas J, Costa V, Tseng CS, Ivankovic F, Ciccodicola A, Yu P.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay054.

PMID:
29931156
15.

Impact of spliceosome mutations on RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical associations.

Pellagatti A, Armstrong RN, Steeples V, Sharma E, Repapi E, Singh S, Sanchi A, Radujkovic A, Horn P, Dolatshad H, Roy S, Broxholme J, Lockstone H, Taylor S, Giagounidis A, Vyas P, Schuh A, Hamblin A, Papaemmanuil E, Killick S, Malcovati L, Hennrich ML, Gavin AC, Ho AD, Luft T, Hellström-Lindberg E, Cazzola M, Smith CWJ, Smith S, Boultwood J.

Blood. 2018 Jun 21. pii: blood-2018-04-843771. doi: 10.1182/blood-2018-04-843771. [Epub ahead of print]

PMID:
29930011
16.

Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumors.

Winters JL, Davila JI, McDonald AM, Nair AA, Fadra N, Wehrs RN, Thomas BC, Balcom JR, Jin L, Wu X, Voss JS, Klee EW, Oliver GR, Graham RP, Neff JL, Rumilla KM, Aypar U, Kipp BR, Jenkins RB, Jen J, Halling KC.

J Mol Diagn. 2018 Jun 13. pii: S1525-1578(17)30541-X. doi: 10.1016/j.jmoldx.2018.03.007. [Epub ahead of print]

PMID:
29929942
17.

Landscape of transcription and long non-coding RNAs reveals new insights into the inflammatory and fibrotic response following ventilator-induced lung injury.

Wang L, Zhang N, Zhang Y, Xia J, Zhan Q, Wang C.

Respir Res. 2018 Jun 22;19(1):122. doi: 10.1186/s12931-018-0822-z.

PMID:
29929510
18.

Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.

Smid M, Coebergh van den Braak RRJ, van de Werken HJG, van Riet J, van Galen A, de Weerd V, van der Vlugt-Daane M, Bril SI, Lalmahomed ZS, Kloosterman WP, Wilting SM, Foekens JA, IJzermans JNM; MATCH study group, Martens JWM, Sieuwerts AM.

BMC Bioinformatics. 2018 Jun 22;19(1):236. doi: 10.1186/s12859-018-2246-7.

PMID:
29929481
19.

CMA restricted to mammals and birds: myth or reality?

Lescat L, Herpin A, Mourot B, Véron V, Guiguen Y, Bobe J, Seiliez I.

Autophagy. 2018 Jun 21. doi: 10.1080/15548627.2018.1460021. [Epub ahead of print]

PMID:
29929419
20.

Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data.

Prabhakaran S, Azizi E, Carr A, Pe'er D.

JMLR Workshop Conf Proc. 2016;48:1070-1079.

PMID:
29928470

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