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Items: 1 to 20 of 133

1.

High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue specificity.

Mattioli K, Volders PJ, Gerhardinger C, Lee JC, Maass PG, Melé M, Rinn JL.

Genome Res. 2019 Jan 25. doi: 10.1101/gr.242222.118. [Epub ahead of print]

2.

Enhancers in the Peril lincRNA locus regulate distant but not local genes.

Groff AF, Barutcu AR, Lewandowski JP, Rinn JL.

Genome Biol. 2018 Dec 11;19(1):219. doi: 10.1186/s13059-018-1589-8.

3.

Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2.

Elling R, Robinson EK, Shapleigh B, Liapis SC, Covarrubias S, Katzman S, Groff AF, Jiang Z, Agarwal S, Motwani M, Chan J, Sharma S, Hennessy EJ, FitzGerald GA, McManus MT, Rinn JL, Fitzgerald KA, Carpenter S.

Cell Rep. 2018 Nov 6;25(6):1511-1524.e6. doi: 10.1016/j.celrep.2018.10.027.

4.

Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome.

Cacchiarelli D, Qiu X, Srivatsan S, Manfredi A, Ziller M, Overbey E, Grimaldi A, Grimsby J, Pokharel P, Livak KJ, Li S, Meissner A, Mikkelsen TS, Rinn JL, Trapnell C.

Cell Syst. 2018 Sep 26;7(3):258-268.e3. doi: 10.1016/j.cels.2018.07.006. Epub 2018 Sep 5.

5.

Interchromosomal interactions: A genomic love story of kissing chromosomes.

Maass PG, Barutcu AR, Rinn JL.

J Cell Biol. 2019 Jan 7;218(1):27-38. doi: 10.1083/jcb.201806052. Epub 2018 Sep 4. Review.

PMID:
30181316
6.

Reorganization of inter-chromosomal interactions in the 2q37-deletion syndrome.

Maass PG, Weise A, Rittscher K, Lichtenwald J, Barutcu AR, Liehr T, Aydin A, Wefeld-Neuenfeld Y, Pölsler L, Tinschert S, Rinn JL, Luft FC, Bähring S.

EMBO J. 2018 Aug 1;37(15). pii: e96257. doi: 10.15252/embj.201696257. Epub 2018 Jun 19.

PMID:
29921581
7.

An Integrated Genome-wide CRISPRa Approach to Functionalize lncRNAs in Drug Resistance.

Bester AC, Lee JD, Chavez A, Lee YR, Nachmani D, Vora S, Victor J, Sauvageau M, Monteleone E, Rinn JL, Provero P, Church GM, Clohessy JG, Pandolfi PP.

Cell. 2018 Apr 19;173(3):649-664.e20. doi: 10.1016/j.cell.2018.03.052.

PMID:
29677511
8.

A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus.

Barutcu AR, Maass PG, Lewandowski JP, Weiner CL, Rinn JL.

Nat Commun. 2018 Apr 13;9(1):1444. doi: 10.1038/s41467-018-03614-0.

9.

A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development.

Cesana M, Guo MH, Cacchiarelli D, Wahlster L, Barragan J, Doulatov S, Vo LT, Salvatori B, Trapnell C, Clement K, Cahan P, Tsanov KM, Sousa PM, Tazon-Vega B, Bolondi A, Giorgi FM, Califano A, Rinn JL, Meissner A, Hirschhorn JN, Daley GQ.

Cell Stem Cell. 2018 Apr 5;22(4):575-588.e7. doi: 10.1016/j.stem.2018.03.012.

PMID:
29625070
10.

Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C.

Maass PG, Barutcu AR, Weiner CL, Rinn JL.

Mol Cell. 2018 Apr 5;70(1):188-189. doi: 10.1016/j.molcel.2018.03.021. No abstract available.

11.

Dynamic changes during the treatment of pancreatic cancer.

Wolff RA, Wang-Gillam A, Alvarez H, Tiriac H, Engle D, Hou S, Groff AF, San Lucas A, Bernard V, Allenson K, Castillo J, Kim D, Mulu F, Huang J, Stephens B, Wistuba II, Katz M, Varadhachary G, Park Y, Hicks J, Chinnaiyan A, Scampavia L, Spicer T, Gerhardinger C, Maitra A, Tuveson D, Rinn J, Lizee G, Yee C, Levine AJ.

Oncotarget. 2018 Feb 13;9(19):14764-14790. doi: 10.18632/oncotarget.24483. eCollection 2018 Mar 13.

12.

Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C.

Maass PG, Barutcu AR, Weiner CL, Rinn JL.

Mol Cell. 2018 Mar 15;69(6):1039-1045.e3. doi: 10.1016/j.molcel.2018.02.007. Epub 2018 Mar 8. Erratum in: Mol Cell. 2018 Apr 5;70(1):188-189.

PMID:
29526697
13.

Genetic determinants and epigenetic effects of pioneer-factor occupancy.

Donaghey J, Thakurela S, Charlton J, Chen JS, Smith ZD, Gu H, Pop R, Clement K, Stamenova EK, Karnik R, Kelley DR, Gifford CA, Cacchiarelli D, Rinn JL, Gnirke A, Ziller MJ, Meissner A.

Nat Genet. 2018 Feb;50(2):250-258. doi: 10.1038/s41588-017-0034-3. Epub 2018 Jan 22.

PMID:
29358654
14.

Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING).

Maass PG, Barutcu AR, Shechner DM, Weiner CL, Melé M, Rinn JL.

Nat Struct Mol Biol. 2018 Feb;25(2):176-184. doi: 10.1038/s41594-017-0015-3. Epub 2018 Jan 8.

15.

High-throughput identification of RNA nuclear enrichment sequences.

Shukla CJ, McCorkindale AL, Gerhardinger C, Korthauer KD, Cabili MN, Shechner DM, Irizarry RA, Maass PG, Rinn JL.

EMBO J. 2018 Mar 15;37(6). pii: e98452. doi: 10.15252/embj.201798452. Epub 2018 Jan 15.

16.

Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.

Kaewsapsak P, Shechner DM, Mallard W, Rinn JL, Ting AY.

Elife. 2017 Dec 14;6. pii: e29224. doi: 10.7554/eLife.29224.

17.

p53 regulates enhancer accessibility and activity in response to DNA damage.

Younger ST, Rinn JL.

Nucleic Acids Res. 2017 Sep 29;45(17):9889-9900. doi: 10.1093/nar/gkx577.

18.

Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA.

Mowel WK, McCright SJ, Kotzin JJ, Collet MA, Uyar A, Chen X, DeLaney A, Spencer SP, Virtue AT, Yang E, Villarino A, Kurachi M, Dunagin MC, Pritchard GH, Stein J, Hughes C, Fonseca-Pereira D, Veiga-Fernandes H, Raj A, Kambayashi T, Brodsky IE, O'Shea JJ, Wherry EJ, Goff LA, Rinn JL, Williams A, Flavell RA, Henao-Mejia J.

Immunity. 2017 Sep 19;47(3):435-449.e8. doi: 10.1016/j.immuni.2017.08.012.

19.

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation.

Delás MJ, Sabin LR, Dolzhenko E, Knott SR, Munera Maravilla E, Jackson BT, Wild SA, Kovacevic T, Stork EM, Zhou M, Erard N, Lee E, Kelley DR, Roth M, Barbosa IA, Zuber J, Rinn JL, Smith AD, Hannon GJ.

Elife. 2017 Sep 6;6. pii: e25607. doi: 10.7554/eLife.25607.

20.

Neat1 is a p53-inducible lincRNA essential for transformation suppression.

Mello SS, Sinow C, Raj N, Mazur PK, Bieging-Rolett K, Broz DK, Imam JFC, Vogel H, Wood LD, Sage J, Hirose T, Nakagawa S, Rinn J, Attardi LD.

Genes Dev. 2017 Jun 1;31(11):1095-1108. doi: 10.1101/gad.284661.116. Epub 2017 Jul 11.

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