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Items: 1 to 20 of 23

1.

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.

Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax025.

2.

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.

Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, Jones MR, Bilski RL, Lesurf R, Feng YY, Shah NM, Bonakdar M, Trani L, Matlock M, Ramu A, Campbell KM, Spies GC, Graubert AP, Gangavarapu K, Eldred JM, Larson DE, Walker JR, Good BM, Wu C, Su AI, Dienstmann R, Margolin AA, Tamborero D, Lopez-Bigas N, Jones SJ, Bose R, Spencer DH, Wartman LD, Wilson RK, Mardis ER, Griffith OL.

Nat Genet. 2017 Jan 31;49(2):170-174. doi: 10.1038/ng.3774. No abstract available.

3.

A comprehensive and scalable database search system for metaproteomics.

Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW.

BMC Genomics. 2016 Aug 16;17(1):642. doi: 10.1186/s12864-016-2855-3.

4.

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.

Bravo À, Li TS, Su AI, Good BM, Furlong LI.

Database (Oxford). 2016 Jun 15;2016. pii: baw094. doi: 10.1093/database/baw094. Print 2016.

5.

Gene Wiki Reviews-Raising the quality and accessibility of information about the human genome.

Tsueng G, Good BM, Ping P, Golemis E, Hanukoglu I, van Wijnen AJ, Su AI.

Gene. 2016 Nov 5;592(2):235-8. doi: 10.1016/j.gene.2016.04.053. Epub 2016 May 2.

6.

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Putman TE, Burgstaller-Muehlbacher S, Waagmeester A, Wu C, Su AI, Good BM.

Database (Oxford). 2016 Mar 28;2016. pii: baw028. doi: 10.1093/database/baw028. Print 2016.

7.

Wikidata as a semantic framework for the Gene Wiki initiative.

Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI.

Database (Oxford). 2016 Mar 17;2016. pii: baw015. doi: 10.1093/database/baw015. Print 2016.

8.

The Implicitome: A Resource for Rationalizing Gene-Disease Associations.

Hettne KM, Thompson M, van Haagen HH, van der Horst E, Kaliyaperumal R, Mina E, Tatum Z, Laros JF, van Mulligen EM, Schuemie M, Aten E, Li TS, Bruskiewich R, Good BM, Su AI, Kors JA, den Dunnen J, van Ommen GJ, Roos M, 't Hoen PA, Mons B, Schultes EA.

PLoS One. 2016 Feb 26;11(2):e0149621. doi: 10.1371/journal.pone.0149621. eCollection 2016.

9.

Crowdsourcing in biomedicine: challenges and opportunities.

Khare R, Good BM, Leaman R, Su AI, Lu Z.

Brief Bioinform. 2016 Jan;17(1):23-32. doi: 10.1093/bib/bbv021. Epub 2015 Apr 17. Review.

10.

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction.

Good BM, Loguercio S, Griffith OL, Nanis M, Wu C, Su AI.

JMIR Serious Games. 2014 Jul 29;2(2):e7. doi: 10.2196/games.3350.

11.

Microtask crowdsourcing for disease mention annotation in PubMed abstracts.

Good BM, Nanis M, Wu C, Su AI.

Pac Symp Biocomput. 2015:282-93.

12.

Organizing knowledge to enable personalization of medicine in cancer.

Good BM, Ainscough BJ, McMichael JF, Su AI, Griffith OL.

Genome Biol. 2014 Aug 27;15(8):438. doi: 10.1186/s13059-014-0438-7.

13.

Functional expression of dental plaque microbiota.

Peterson SN, Meissner T, Su AI, Snesrud E, Ong AC, Schork NJ, Bretz WA.

Front Cell Infect Microbiol. 2014 Aug 14;4:108. doi: 10.3389/fcimb.2014.00108. eCollection 2014.

14.

Gene Wiki Reviews: marrying crowdsourcing with traditional peer review.

Su AI, Good BM, van Wijnen AJ.

Gene. 2013 Dec 1;531(2):125. doi: 10.1016/j.gene.2013.08.093. Epub 2013 Sep 5. No abstract available.

PMID:
24012870
15.

Crowdsourcing for bioinformatics.

Good BM, Su AI.

Bioinformatics. 2013 Aug 15;29(16):1925-33. doi: 10.1093/bioinformatics/btt333. Epub 2013 Jun 19. Review.

16.

A task-based approach for Gene Ontology evaluation.

Clarke EL, Loguercio S, Good BM, Su AI.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S4. doi: 10.1186/2041-1480-4-S1-S4. Epub 2013 Apr 15.

17.

BioGPS and MyGene.info: organizing online, gene-centric information.

Wu C, Macleod I, Su AI.

Nucleic Acids Res. 2013 Jan;41(Database issue):D561-5. doi: 10.1093/nar/gks1114. Epub 2012 Nov 21.

18.

Zone-specific gene expression patterns in articular cartilage.

Grogan SP, Duffy SF, Pauli C, Koziol JA, Su AI, D'Lima DD, Lotz MK.

Arthritis Rheum. 2013 Feb;65(2):418-28. doi: 10.1002/art.37760.

19.

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

Good BM, Clarke EL, Loguercio S, Su AI.

J Biomed Semantics. 2012 Apr 24;3 Suppl 1:S6. doi: 10.1186/2041-1480-3-S1-S6.

20.

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links.

Good BM, Clarke EL, Loguercio S, Su AI.

Database (Oxford). 2012 Mar 20;2012:bar060. doi: 10.1093/database/bar060. Print 2012.

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