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Molecular phylogenomics of the tribe Shoreeae (Dipterocarpaceae) using whole plastid genomes.

Heckenhauer J, Paun O, Chase MW, Ashton PS, Kamariah AS, Samuel R.

Ann Bot. 2018 Dec 12. doi: 10.1093/aob/mcy220. [Epub ahead of print]


Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics.

Paun O, Verhoeven KJF, Richards CL.

New Phytol. 2019 Jan;221(2):738-742. doi: 10.1111/nph.15388. Epub 2018 Aug 19. Review.


Phylogenomics resolves evolutionary relationships and provides insights into floral evolution in the tribe Shoreeae (Dipterocarpaceae).

Heckenhauer J, Samuel R, Ashton PS, Abu Salim K, Paun O.

Mol Phylogenet Evol. 2018 Oct;127:1-13. doi: 10.1016/j.ympev.2018.05.010. Epub 2018 May 17.


Ecological plant epigenetics: Evidence from model and non-model species, and the way forward.

Richards CL, Alonso C, Becker C, Bossdorf O, Bucher E, Colomé-Tatché M, Durka W, Engelhardt J, Gaspar B, Gogol-Döring A, Grosse I, van Gurp TP, Heer K, Kronholm I, Lampei C, Latzel V, Mirouze M, Opgenoorth L, Paun O, Prohaska SJ, Rensing SA, Stadler PF, Trucchi E, Ullrich K, Verhoeven KJF.

Ecol Lett. 2017 Dec;20(12):1576-1590. doi: 10.1111/ele.12858. Epub 2017 Oct 12. Review.


Genomic analyses suggest parallel ecological divergence in Heliosperma pusillum (Caryophyllaceae).

Trucchi E, Frajman B, Haverkamp THA, Schönswetter P, Paun O.

New Phytol. 2017 Oct;216(1):267-278. doi: 10.1111/nph.14722. Epub 2017 Aug 7.


RADseq provides evidence for parallel ecotypic divergence in the autotetraploid Cochlearia officinalis in Northern Norway.

Brandrud MK, Paun O, Lorenzo MT, Nordal I, Brysting AK.

Sci Rep. 2017 Jul 17;7(1):5573. doi: 10.1038/s41598-017-05794-z.


Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima.

Balao F, Trucchi E, Wolfe TM, Hao BH, Lorenzo MT, Baar J, Sedman L, Kosiol C, Amman F, Chase MW, Hedrén M, Paun O.

Mol Ecol. 2017 Jul;26(14):3649-3662. doi: 10.1111/mec.14123. Epub 2017 Apr 27.


Sequencing of whole plastid genomes and nuclear ribosomal DNA of Diospyros species (Ebenaceae) endemic to New Caledonia: many species, little divergence.

Turner B, Paun O, Munzinger J, Chase MW, Samuel R.

Ann Bot. 2016 Jun;117(7):1175-85. doi: 10.1093/aob/mcw060. Epub 2016 Apr 20.


BsRADseq: screening DNA methylation in natural populations of non-model species.

Trucchi E, Mazzarella AB, Gilfillan GD, Lorenzo MT, Schönswetter P, Paun O.

Mol Ecol. 2016 Apr;25(8):1697-713. doi: 10.1111/mec.13550. Epub 2016 Mar 28.


Processes Driving the Adaptive Radiation of a Tropical Tree (Diospyros, Ebenaceae) in New Caledonia, a Biodiversity Hotspot.

Paun O, Turner B, Trucchi E, Munzinger J, Chase MW, Samuel R.

Syst Biol. 2016 Mar;65(2):212-27. doi: 10.1093/sysbio/syv076. Epub 2015 Oct 1.


Emergence of apospory and bypass of meiosis via apomixis after sexual hybridisation and polyploidisation.

Hojsgaard D, Greilhuber J, Pellino M, Paun O, Sharbel TF, Hörandl E.

New Phytol. 2014 Dec;204(4):1000-12. doi: 10.1111/nph.12954. Epub 2014 Jul 31.


ITS polymorphisms shed light on hybrid evolution in apomictic plants: a case study on the Ranunculus auricomus complex.

Hodač L, Scheben AP, Hojsgaard D, Paun O, Hörandl E.

PLoS One. 2014 Jul 25;9(7):e103003. doi: 10.1371/journal.pone.0103003. eCollection 2014.


Analyses of amplified fragment length polymorphisms (AFLP) indicate rapid radiation of Diospyros species (Ebenaceae) endemic to New Caledonia.

Turner B, Paun O, Munzinger J, Duangjai S, Chase MW, Samuel R.

BMC Evol Biol. 2013 Dec 12;13:269. doi: 10.1186/1471-2148-13-269.


Genetic diversity in widespread species is not congruent with species richness in alpine plant communities.

Taberlet P, Zimmermann NE, Englisch T, Tribsch A, Holderegger R, Alvarez N, Niklfeld H, Coldea G, Mirek Z, Moilanen A, Ahlmer W, Marsan PA, Bona E, Bovio M, Choler P, Cieślak E, Colli L, Cristea V, Dalmas JP, Frajman B, Garraud L, Gaudeul M, Gielly L, Gutermann W, Jogan N, Kagalo AA, Korbecka G, Küpfer P, Lequette B, Letz DR, Manel S, Mansion G, Marhold K, Martini F, Negrini R, Niño F, Paun O, Pellecchia M, Perico G, Piękoś-Mirkowa H, Prosser F, Puşcaş M, Ronikier M, Scheuerer M, Schneeweiss GM, Schönswetter P, Schratt-Ehrendorfer L, Schüpfer F, Selvaggi A, Steinmann K, Thiel-Egenter C, van Loo M, Winkler M, Wohlgemuth T, Wraber T, Gugerli F; IntraBioDiv Consortium, Vellend M.

Ecol Lett. 2012 Dec;15(12):1439-48. doi: 10.1111/ele.12004. Epub 2012 Sep 25.


Environmental heterogeneity and phenotypic divergence: can heritable epigenetic variation aid speciation?

Flatscher R, Frajman B, Schönswetter P, Paun O.

Genet Res Int. 2012;2012:698421. doi: 10.1155/2012/698421. Epub 2012 Mar 4.


Parental divergence and hybrid speciation in angiosperms revisited.

Paun O, Forest F, Fay MF, Chase MW.

Taxon. 2011 Oct 1;60(5):1241-1244. No abstract available.


Altered gene expression and ecological divergence in sibling allopolyploids of Dactylorhiza (Orchidaceae).

Paun O, Bateman RM, Fay MF, Luna JA, Moat J, Hedrén M, Chase MW.

BMC Evol Biol. 2011 Apr 26;11:113. doi: 10.1186/1471-2148-11-113.

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