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Items: 4

1.

Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading.

Rahn R, Budach S, Costanza P, Ehrhardt M, Hancox J, Reinert K.

Bioinformatics. 2018 May 3. doi: 10.1093/bioinformatics/bty380. [Epub ahead of print]

PMID:
29726911
2.

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce.

Decap D, Reumers J, Herzeel C, Costanza P, Fostier J.

PLoS One. 2017 Mar 30;12(3):e0174575. doi: 10.1371/journal.pone.0174575. eCollection 2017.

3.

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling.

Herzeel C, Costanza P, Decap D, Fostier J, Reumers J.

PLoS One. 2015 Jul 16;10(7):e0132868. doi: 10.1371/journal.pone.0132868. eCollection 2015.

4.

Halvade: scalable sequence analysis with MapReduce.

Decap D, Reumers J, Herzeel C, Costanza P, Fostier J.

Bioinformatics. 2015 Aug 1;31(15):2482-8. doi: 10.1093/bioinformatics/btv179. Epub 2015 Mar 26.

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