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Items: 1 to 20 of 28


AID/APOBEC-network reconstruction identifies pathways associated with survival in ovarian cancer.

Svoboda M, Meshcheryakova A, Heinze G, Jaritz M, Pils D, Castillo-Tong DC, Hager G, Thalhammer T, Jensen-Jarolim E, Birner P, Braicu I, Sehouli J, Lambrechts S, Vergote I, Mahner S, Zimmermann P, Zeillinger R, Mechtcheriakova D.

BMC Genomics. 2016 Aug 16;17(1):643. doi: 10.1186/s12864-016-3001-y.


Exploring the role of sphingolipid machinery during the epithelial to mesenchymal transition program using an integrative approach.

Meshcheryakova A, Svoboda M, Tahir A, Köfeler HC, Triebl A, Mungenast F, Heinze G, Gerner C, Zimmermann P, Jaritz M, Mechtcheriakova D.

Oncotarget. 2016 Apr 19;7(16):22295-323. doi: 10.18632/oncotarget.7947.


ExpressionData - A public resource of high quality curated datasets representing gene expression across anatomy, development and experimental conditions.

Zimmermann P, Bleuler S, Laule O, Martin F, Ivanov NV, Campanoni P, Oishi K, Lugon-Moulin N, Wyss M, Hruz T, Gruissem W.

BioData Min. 2014 Aug 31;7:18. doi: 10.1186/1756-0381-7-18. eCollection 2014.


Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions.

Hiss M, Laule O, Meskauskiene RM, Arif MA, Decker EL, Erxleben A, Frank W, Hanke ST, Lang D, Martin A, Neu C, Reski R, Richardt S, Schallenberg-Rüdinger M, Szövényi P, Tiko T, Wiedemann G, Wolf L, Zimmermann P, Rensing SA.

Plant J. 2014 Aug;79(3):530-9. doi: 10.1111/tpj.12572. Epub 2014 Jul 9.


Global regulatory architecture of human, mouse and rat tissue transcriptomes.

Prasad A, Kumar SS, Dessimoz C, Bleuler S, Laule O, Hruz T, Gruissem W, Zimmermann P.

BMC Genomics. 2013 Oct 20;14:716. doi: 10.1186/1471-2164-14-716.


Controlled vocabularies for plant anatomical parts optimized for use in data analysis tools and for cross-species studies.

Meskauskiene R, Laule O, Ivanov NV, Martin F, Wyss M, Gruissem W, Zimmermann P.

Plant Methods. 2013 Aug 6;9(1):33. doi: 10.1186/1746-4811-9-33.


A multilevel gamma-clustering layout algorithm for visualization of biological networks.

Hruz T, Wyss M, Lucas C, Laule O, von Rohr P, Zimmermann P, Bleuler S.

Adv Bioinformatics. 2013;2013:920325. doi: 10.1155/2013/920325. Epub 2013 Jun 26.


The Arabidopsis Rho of plants GTPase AtROP6 functions in developmental and pathogen response pathways.

Poraty-Gavra L, Zimmermann P, Haigis S, Bednarek P, Hazak O, Stelmakh OR, Sadot E, Schulze-Lefert P, Gruissem W, Yalovsky S.

Plant Physiol. 2013 Mar;161(3):1172-88. doi: 10.1104/pp.112.213165. Epub 2013 Jan 14.


Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome.

Beleut M, Zimmermann P, Baudis M, Bruni N, Bühlmann P, Laule O, Luu VD, Gruissem W, Schraml P, Moch H.

BMC Cancer. 2012 Jul 23;12:310. doi: 10.1186/1471-2407-12-310.


The importance of size: successful recanalization by intravenous thrombolysis in acute anterior stroke depends on thrombus length.

Riedel CH, Zimmermann P, Jensen-Kondering U, Stingele R, Deuschl G, Jansen O.

Stroke. 2011 Jun;42(6):1775-7. doi: 10.1161/STROKEAHA.110.609693. Epub 2011 Apr 7.


RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization.

Hruz T, Wyss M, Docquier M, Pfaffl MW, Masanetz S, Borghi L, Verbrugghe P, Kalaydjieva L, Bleuler S, Laule O, Descombes P, Gruissem W, Zimmermann P.

BMC Genomics. 2011 Mar 21;12:156. doi: 10.1186/1471-2164-12-156.


Gene expression analysis, proteomics, and network discovery.

Baginsky S, Hennig L, Zimmermann P, Gruissem W.

Plant Physiol. 2010 Feb;152(2):402-10. doi: 10.1104/pp.109.150433. Epub 2009 Dec 11. Review. No abstract available.


The hyperdense anterior cerebral artery sign (HACAS) as a computed tomography marker for acute ischemia in the anterior cerebral artery territory.

Jensen UR, Weiss M, Zimmermann P, Jansen O, Riedel C.

Cerebrovasc Dis. 2010;29(1):62-7. doi: 10.1159/000256648. Epub 2009 Nov 10.


Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases.

Zimmermann P, Laule O, Schmitz J, Hruz T, Bleuler S, Gruissem W.

Mol Plant. 2008 Sep;1(5):851-7. doi: 10.1093/mp/ssn048. Erratum in: Mol Plant. 2008 Nov;1(6):1088.


Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S.

Science. 2008 May 16;320(5878):938-41. doi: 10.1126/science.1157956. Epub 2008 Apr 24.


Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes.

Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P.

Adv Bioinformatics. 2008;2008:420747. doi: 10.1155/2008/420747. Epub 2008 Jul 8.


Network analysis of systems elements.

Schöner D, Barkow S, Bleuler S, Wille A, Zimmermann P, Bühlmann P, Gruissem W, Zitzler E.

EXS. 2007;97:331-51. Review.


Engineering the root-soil interface via targeted expression of a synthetic phytase gene in trichoblasts.

Zimmermann P, Zardi G, Lehmann M, Zeder C, Amrhein N, Frossard E, Bucher M.

Plant Biotechnol J. 2003 Sep;1(5):353-60.


Web-based analysis of the mouse transcriptome using Genevestigator.

Laule O, Hirsch-Hoffmann M, Hruz T, Gruissem W, Zimmermann P.

BMC Bioinformatics. 2006 Jun 21;7:311.


BicAT: a biclustering analysis toolbox.

Barkow S, Bleuler S, Prelic A, Zimmermann P, Zitzler E.

Bioinformatics. 2006 May 15;22(10):1282-3. Epub 2006 Mar 21.


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