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Items: 1 to 20 of 93

1.

Genomic Comparison of Facultatively Anaerobic and Obligatory Aerobic <i>Caldibacillus debilis</i> Strains GB1 and Tf Helps Explain Physiological Differences.

Wushke ST, Froese A, Fristensky B, Zhang XL, Spicer V, Krokhin O, Levin DB, Sparling R.

Can J Microbiol. 2019 Jan 29. doi: 10.1139/cjm-2018-0464. [Epub ahead of print]

PMID:
30694700
2.

Universal retention standard for peptide separations using various modes of high-performance liquid chromatography.

Klaassen N, Spicer V, Krokhin OV.

J Chromatogr A. 2018 Dec 26. pii: S0021-9673(18)31577-2. doi: 10.1016/j.chroma.2018.12.057. [Epub ahead of print]

PMID:
30626502
3.

Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Large-Scale Phosphoproteomics with the Production of over 11,000 Phosphopeptides from the Colon Carcinoma HCT116 Cell Line.

Chen D, Ludwig KR, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L.

Anal Chem. 2019 Feb 5;91(3):2201-2208. doi: 10.1021/acs.analchem.8b04770. Epub 2019 Jan 23.

PMID:
30624053
4.

A metabolic and genomic assessment of sugar fermentation profiles of the thermophilic Thermotogales, Fervidobacterium pennivorans.

Wushke S, Fristensky B, Zhang XL, Spicer V, Krokhin OV, Levin DB, Stott MB, Sparling R.

Extremophiles. 2018 Nov;22(6):965-974. doi: 10.1007/s00792-018-1053-4. Epub 2018 Sep 4.

PMID:
30182148
5.

Retention Order Reversal of Phosphorylated and Unphosphorylated Peptides in Reversed-Phase LC/MS.

Ogata K, Krokhin OV, Ishihama Y.

Anal Sci. 2018 Sep 10;34(9):1037-1041. doi: 10.2116/analsci.18SCP11. Epub 2018 Jul 27.

6.

Absolute Quantitation of Glycoforms of Two Human IgG Subclasses Using Synthetic Fc Peptides and Glycopeptides.

Roy R, Ang E, Komatsu E, Domalaon R, Bosseboeuf A, Harb J, Hermouet S, Krokhin O, Schweizer F, Perreault H.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1086-1098. doi: 10.1007/s13361-018-1900-7. Epub 2018 May 23.

PMID:
29796736
7.

Description of a cryptic thermophilic (pro)phage, CBP1 from Caldibacillus debilis strain GB1.

Wushke S, Jin Z, Spicer V, Zhang XL, Fristensky B, Krokhin OV, Levin DB, Sparling R.

Extremophiles. 2018 Mar;22(2):203-209. doi: 10.1007/s00792-017-0988-1. Epub 2018 Jan 30.

PMID:
29380170
8.

Peptide retention time prediction in hydrophilic interaction liquid chromatography. Comparison of separation selectivity between bare silica and bonded stationary phases.

Spicer V, Krokhin OV.

J Chromatogr A. 2018 Jan 26;1534:75-84. doi: 10.1016/j.chroma.2017.12.046. Epub 2017 Dec 18.

PMID:
29306631
9.

Sequence-Specific Model for Peptide Retention Time Prediction in Strong Cation Exchange Chromatography.

Gussakovsky D, Neustaeter H, Spicer V, Krokhin OV.

Anal Chem. 2017 Nov 7;89(21):11795-11802. doi: 10.1021/acs.analchem.7b03436. Epub 2017 Oct 17.

PMID:
28971681
10.

Interferon γ induced compositional changes in human bone marrow derived mesenchymal stem/stromal cells.

Guan Q, Ezzati P, Spicer V, Krokhin O, Wall D, Wilkins JA.

Clin Proteomics. 2017 Jul 6;14:26. doi: 10.1186/s12014-017-9161-1. eCollection 2017.

12.

Understanding aerobic/anaerobic metabolism in Caldibacillus debilis through a comparison with model organisms.

Wushke S, Spicer V, Zhang XL, Fristensky B, Krokhin OV, Levin DB, Cicek N, Sparling R.

Syst Appl Microbiol. 2017 Jul;40(5):245-253. doi: 10.1016/j.syapm.2017.03.004. Epub 2017 Apr 13.

PMID:
28527624
13.

Peptide Retention Time Prediction in Hydrophilic Interaction Liquid Chromatography: Data Collection Methods and Features of Additive and Sequence-Specific Models.

Krokhin OV, Ezzati P, Spicer V.

Anal Chem. 2017 May 16;89(10):5526-5533. doi: 10.1021/acs.analchem.7b00537. Epub 2017 Apr 26.

PMID:
28429592
14.

Investigating Acquisition Performance on the Orbitrap Fusion When Using Tandem MS/MS/MS Scanning with Isobaric Tags.

Hughes CS, Spicer V, Krokhin OV, Morin GB.

J Proteome Res. 2017 May 5;16(5):1839-1846. doi: 10.1021/acs.jproteome.7b00091. Epub 2017 Apr 20.

PMID:
28418257
15.

Evaluating the Characteristics of Reporter Ion Signal Acquired in the Orbitrap Analyzer for Isobaric Mass Tag Proteome Quantification Experiments.

Hughes CS, Zhu C, Spicer V, Krokhin OV, Morin GB.

J Proteome Res. 2017 May 5;16(5):1831-1838. doi: 10.1021/acs.jproteome.7b00092. Epub 2017 Apr 20.

PMID:
28418254
16.

Predicting Electrophoretic Mobility of Tryptic Peptides for High-Throughput CZE-MS Analysis.

Krokhin OV, Anderson G, Spicer V, Sun L, Dovichi NJ.

Anal Chem. 2017 Feb 7;89(3):2000-2008. doi: 10.1021/acs.analchem.6b04544. Epub 2017 Jan 19.

17.

A deletion variant partially complements a porin-less strain of Neurospora crassa.

Ferens FG, Spicer V, Krokhin OV, Motnenko A, Summers WA, Court DA.

Biochem Cell Biol. 2017 Apr;95(2):318-327. doi: 10.1139/bcb-2016-0166. Epub 2016 Nov 2.

PMID:
28177769
18.

Generation of accurate peptide retention data for targeted and data independent quantitative LC-MS analysis: Chromatographic lessons in proteomics.

Krokhin OV, Spicer V.

Proteomics. 2016 Dec;16(23):2931-2936. doi: 10.1002/pmic.201600283. Epub 2016 Nov 21.

PMID:
27701844
19.

A proteomic evaluation of urinary changes associated with cardiopulmonary bypass.

Dwivedi RC, Navarrete M, Choi N, Spicer V, Rigatto C, Arora RC, Krokhin O, Ho J, Wilkins JA.

Clin Proteomics. 2016 Aug 15;13:17. doi: 10.1186/s12014-016-9118-9. eCollection 2016.

20.

Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose.

Munir RI, Spicer V, Krokhin OV, Shamshurin D, Zhang X, Taillefer M, Blunt W, Cicek N, Sparling R, Levin DB.

BMC Microbiol. 2016 May 23;16:91. doi: 10.1186/s12866-016-0711-x.

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