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DNA methylation dynamics in human induced pluripotent stem cells over time.
Nishino K, Toyoda M, Yamazaki-Inoue M, Fukawatase Y, Chikazawa E, Sakaguchi H, Akutsu H, Umezawa A.
PLoS Genet. 2011 May;7(5):e1002085. doi: 10.1371/journal.pgen.1002085. Epub 2011 May 26.
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Epigenetic-scale comparison of human iPSCs generated by retrovirus, Sendai virus or episomal vectors.
Nishino K, Arai Y, Takasawa K, Toyoda M, Yamazaki-Inoue M, Sugawara T, Akutsu H, Nishimura K, Ohtaka M, Nakanishi M, Umezawa A.
Regen Ther. 2018 Sep 1;9:71-78. doi: 10.1016/j.reth.2018.08.002. eCollection 2018 Dec.
Genome-wide DNA methylation profiling in cultured eutopic and ectopic endometrial stromal cells.
Yamagata Y, Nishino K, Takaki E, Sato S, Maekawa R, Nakai A, Sugino N.
PLoS One. 2014 Jan 23;9(1):e83612. doi: 10.1371/journal.pone.0083612. eCollection 2014.
Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin.
Kaneko S, Bonasio R, Saldaña-Meyer R, Yoshida T, Son J, Nishino K, Umezawa A, Reinberg D.
Mol Cell. 2014 Jan 23;53(2):290-300. doi: 10.1016/j.molcel.2013.11.012. Epub 2013 Dec 26.
DNA hypermethylation enhanced telomerase reverse transcriptase expression in human-induced pluripotent stem cells.
Takasawa K, Arai Y, Yamazaki-Inoue M, Toyoda M, Akutsu H, Umezawa A, Nishino K.
Hum Cell. 2018 Jan;31(1):78-86. doi: 10.1007/s13577-017-0190-x. Epub 2017 Nov 4.
Stage-by-stage change in DNA methylation status of Dnmt1 locus during mouse early development.
Ko YG, Nishino K, Hattori N, Arai Y, Tanaka S, Shiota K.
J Biol Chem. 2005 Mar 11;280(10):9627-34. Epub 2005 Jan 4.
Methylation in embryonic stem cells in vitro.
Nishino K, Ohgane J, Suzuki M, Hattori N, Shiota K.
Methods Mol Biol. 2006;329:421-45.
Non-CpG methylation occurs in the regulatory region of the Sry gene.
Nishino K, Hattori N, Sato S, Arai Y, Tanaka S, Nagy A, Shiota K.
J Reprod Dev. 2011 Oct;57(5):586-93. Epub 2011 Jun 3.
Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells.
Hattori N, Imao Y, Nishino K, Hattori N, Ohgane J, Yagi S, Tanaka S, Shiota K.
Genes Cells. 2007 Mar;12(3):387-96.
Epigenetic control of mouse Oct-4 gene expression in embryonic stem cells and trophoblast stem cells.
Hattori N, Nishino K, Ko YG, Hattori N, Ohgane J, Tanaka S, Shiota K.
J Biol Chem. 2004 Apr 23;279(17):17063-9. Epub 2004 Feb 4.
Epigenetic marks by DNA methylation specific to stem, germ and somatic cells in mice.
Shiota K, Kogo Y, Ohgane J, Imamura T, Urano A, Nishino K, Tanaka S, Hattori N.
Genes Cells. 2002 Sep;7(9):961-9.
Stability of genomic imprinting in human induced pluripotent stem cells.
Hiura H, Toyoda M, Okae H, Sakurai M, Miyauchi N, Sato A, Kiyokawa N, Okita H, Miyagawa Y, Akutsu H, Nishino K, Umezawa A, Arima T.
BMC Genet. 2013 Apr 30;14:32. doi: 10.1186/1471-2156-14-32.
Noncanonical NOTCH signaling limits self-renewal of human epithelial and induced pluripotent stem cells through ROCK activation.
Yugawa T, Nishino K, Ohno S, Nakahara T, Fujita M, Goshima N, Umezawa A, Kiyono T.
Mol Cell Biol. 2013 Nov;33(22):4434-47. doi: 10.1128/MCB.00577-13. Epub 2013 Sep 9.
DNA methylation dynamics in human induced pluripotent stem cells.
Nishino K, Umezawa A.
Hum Cell. 2016 Jul;29(3):97-100. doi: 10.1007/s13577-016-0139-5. Epub 2016 Apr 15. Review.
Tetraploid Embryonic Stem Cells Maintain Pluripotency and Differentiation Potency into Three Germ Layers.
Imai H, Kano K, Fujii W, Takasawa K, Wakitani S, Hiyama M, Nishino K, Kusakabe KT, Kiso Y.
PLoS One. 2015 Jun 19;10(6):e0130585. doi: 10.1371/journal.pone.0130585. eCollection 2015.
Investigating cellular identity and manipulating cell fate using induced pluripotent stem cells.
Sugawara T, Nishino K, Umezawa A, Akutsu H.
Stem Cell Res Ther. 2012 Mar 8;3(2):8. doi: 10.1186/scrt99. Review.
Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells.
Saito S, Onuma Y, Ito Y, Tateno H, Toyoda M, Hidenori A, Nishino K, Chikazawa E, Fukawatase Y, Miyagawa Y, Okita H, Kiyokawa N, Shimma Y, Umezawa A, Hirabayashi J, Horimoto K, Asashima M.
BMC Syst Biol. 2011 Jun 20;5 Suppl 1:S17. doi: 10.1186/1752-0509-5-S1-S17.
Defining hypo-methylated regions of stem cell-specific promoters in human iPS cells derived from extra-embryonic amnions and lung fibroblasts.
Nishino K, Toyoda M, Yamazaki-Inoue M, Makino H, Fukawatase Y, Chikazawa E, Takahashi Y, Miyagawa Y, Okita H, Kiyokawa N, Akutsu H, Umezawa A.
PLoS One. 2010 Sep 27;5(9):e13017. doi: 10.1371/journal.pone.0013017.
Mesenchymal to embryonic incomplete transition of human cells by chimeric OCT4/3 (POU5F1) with physiological co-activator EWS.
Makino H, Toyoda M, Matsumoto K, Saito H, Nishino K, Fukawatase Y, Machida M, Akutsu H, Uyama T, Miyagawa Y, Okita H, Kiyokawa N, Fujino T, Ishikawa Y, Nakamura T, Umezawa A.
Exp Cell Res. 2009 Oct 1;315(16):2727-40. doi: 10.1016/j.yexcr.2009.06.016. Epub 2009 Jun 24.
Efficient reprogramming of human and mouse primary extra-embryonic cells to pluripotent stem cells.
Nagata S, Toyoda M, Yamaguchi S, Hirano K, Makino H, Nishino K, Miyagawa Y, Okita H, Kiyokawa N, Nakagawa M, Yamanaka S, Akutsu H, Umezawa A, Tada T.
Genes Cells. 2009 Dec;14(12):1395-404. doi: 10.1111/j.1365-2443.2009.01356.x. Epub 2009 Nov 13.
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