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Items: 1 to 20 of 94

1.

Differential regulation of RNA polymerase III genes during liver regeneration.

Yeganeh M, Praz V, Carmeli C, Villeneuve D, Rib L, Guex N, Herr W, Delorenzi M, Hernandez N; CycliX consortium .

Nucleic Acids Res. 2018 Dec 29. doi: 10.1093/nar/gky1282. [Epub ahead of print]

PMID:
30597109
2.

Cross-regulatory circuits linking inflammation, high-fat diet, and the circadian clock.

Gachon F, Yeung J, Naef F.

Genes Dev. 2018 Nov 1;32(21-22):1359-1360. doi: 10.1101/gad.320911.118. Review.

PMID:
30385518
3.

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism.

Weger BD, Gobet C, Yeung J, Martin E, Jimenez S, Betrisey B, Foata F, Berger B, Balvay A, Foussier A, Charpagne A, Boizet-Bonhoure B, Chou CJ, Naef F, Gachon F.

Cell Metab. 2018 Oct 15. pii: S1550-4131(18)30631-4. doi: 10.1016/j.cmet.2018.09.023. [Epub ahead of print]

4.

Rhythms of the Genome: Circadian Dynamics from Chromatin Topology, Tissue-Specific Gene Expression, to Behavior.

Yeung J, Naef F.

Trends Genet. 2018 Dec;34(12):915-926. doi: 10.1016/j.tig.2018.09.005. Epub 2018 Oct 8. Review.

PMID:
30309754
5.

Cycles of gene expression and genome response during mammalian tissue regeneration.

Rib L, Villeneuve D, Minocha S, Praz V, Hernandez N, Guex N, Herr W; CycliX Consortium.

Epigenetics Chromatin. 2018 Sep 12;11(1):52. doi: 10.1186/s13072-018-0222-0.

6.

Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell-Cycle Dependence of Degradation Rates.

Alber AB, Paquet ER, Biserni M, Naef F, Suter DM.

Mol Cell. 2018 Sep 20;71(6):1079-1091.e9. doi: 10.1016/j.molcel.2018.07.023. Epub 2018 Aug 23.

PMID:
30146318
7.

Modulation of transcriptional burst frequency by histone acetylation.

Nicolas D, Zoller B, Suter DM, Naef F.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7153-7158. doi: 10.1073/pnas.1722330115. Epub 2018 Jun 18.

8.

Clock-dependent chromatin topology modulates circadian transcription and behavior.

Mermet J, Yeung J, Hurni C, Mauvoisin D, Gustafson K, Jouffe C, Nicolas D, Emmenegger Y, Gobet C, Franken P, Gachon F, Naef F.

Genes Dev. 2018 Mar 1;32(5-6):347-358. doi: 10.1101/gad.312397.118. Epub 2018 Mar 23.

9.

Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver.

Wang J, Symul L, Yeung J, Gobet C, Sobel J, Lück S, Westermark PO, Molina N, Naef F.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):E1916-E1925. doi: 10.1073/pnas.1715225115. Epub 2018 Feb 5.

10.

Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs.

Yeung J, Mermet J, Jouffe C, Marquis J, Charpagne A, Gachon F, Naef F.

Genome Res. 2018 Feb;28(2):182-191. doi: 10.1101/gr.222430.117. Epub 2017 Dec 18.

11.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

12.

Circadian and Feeding Rhythms Orchestrate the Diurnal Liver Acetylome.

Mauvoisin D, Atger F, Dayon L, Núñez Galindo A, Wang J, Martin E, Da Silva L, Montoliu I, Collino S, Martin FP, Ratajczak J, Cantó C, Kussmann M, Naef F, Gachon F.

Cell Rep. 2017 Aug 15;20(7):1729-1743. doi: 10.1016/j.celrep.2017.07.065.

13.

What shapes eukaryotic transcriptional bursting?

Nicolas D, Phillips NE, Naef F.

Mol Biosyst. 2017 Jun 27;13(7):1280-1290. doi: 10.1039/c7mb00154a. Review.

PMID:
28573295
14.

Transcriptional regulatory logic of the diurnal cycle in the mouse liver.

Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F; CycliX consortium.

PLoS Biol. 2017 Apr 17;15(4):e2001069. doi: 10.1371/journal.pbio.2001069. eCollection 2017 Apr.

15.

A new promoter element associated with daily time keeping in Drosophila.

Sharp B, Paquet E, Naef F, Bafna A, Wijnen H.

Nucleic Acids Res. 2017 Jun 20;45(11):6459-6470. doi: 10.1093/nar/gkx268.

16.

Ribosome profiling and dynamic regulation of translation in mammals.

Gobet C, Naef F.

Curr Opin Genet Dev. 2017 Apr;43:120-127. doi: 10.1016/j.gde.2017.03.005. Epub 2017 Mar 28. Review.

17.

Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.

Mange F, Praz V, Migliavacca E, Willis IM, Schütz F, Hernandez N; CycliX Consortium.

Genome Res. 2017 Jun;27(6):973-984. doi: 10.1101/gr.217521.116. Epub 2017 Mar 24.

18.

Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World.

Mermet J, Yeung J, Naef F.

Cold Spring Harb Perspect Biol. 2017 Mar 1;9(3). pii: a028720. doi: 10.1101/cshperspect.a028720. Review.

PMID:
27920039
19.

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.

Wang J, Mauvoisin D, Martin E, Atger F, Galindo AN, Dayon L, Sizzano F, Palini A, Kussmann M, Waridel P, Quadroni M, Dulić V, Naef F, Gachon F.

Cell Metab. 2017 Jan 10;25(1):102-117. doi: 10.1016/j.cmet.2016.10.003. Epub 2016 Nov 3.

20.

Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp.

Gotic I, Omidi S, Fleury-Olela F, Molina N, Naef F, Schibler U.

Genes Dev. 2016 Sep 1;30(17):2005-17. doi: 10.1101/gad.287094.116. Epub 2016 Sep 15.

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