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Items: 19

1.

Gut Microbiota Has a Widespread and Modifiable Effect on Host Gene Regulation.

Richards AL, Muehlbauer AL, Alazizi A, Burns MB, Findley A, Messina F, Gould TJ, Cascardo C, Pique-Regi R, Blekhman R, Luca F.

mSystems. 2019 Sep 3;4(5). pii: e00323-18. doi: 10.1128/mSystems.00323-18.

2.

Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints.

Gomez A, Sharma AK, Mallott EK, Petrzelkova KJ, Jost Robinson CA, Yeoman CJ, Carbonero F, Pafco B, Rothman JM, Ulanov A, Vlckova K, Amato KR, Schnorr SL, Dominy NJ, Modry D, Todd A, Torralba M, Nelson KE, Burns MB, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber PA, White BA, Leigh SR.

mSphere. 2019 Jul 31;4(4). pii: e00271-19. doi: 10.1128/mSphere.00271-19.

3.

Mapping gastrointestinal gene expression patterns in wild primates and humans via fecal RNA-seq.

Sharma AK, Pafčo B, Vlčková K, Červená B, Kreisinger J, Davison S, Beeri K, Fuh T, Leigh SR, Burns MB, Blekhman R, Petrželková KJ, Gomez A.

BMC Genomics. 2019 Jun 14;20(1):493. doi: 10.1186/s12864-019-5813-z.

4.

Integrating tumor genomics into studies of the microbiome in colorectal cancer.

Burns MB, Blekhman R.

Gut Microbes. 2019;10(4):547-552. doi: 10.1080/19490976.2018.1549421. Epub 2018 Dec 17.

5.

Transposon mutagenesis screen in mice identifies TM9SF2 as a novel colorectal cancer oncogene.

Clark CR, Maile M, Blaney P, Hellweg SR, Strauss A, Durose W, Priya S, Habicht J, Burns MB, Blekhman R, Abrahante JE, Starr TK.

Sci Rep. 2018 Oct 17;8(1):15327. doi: 10.1038/s41598-018-33527-3.

6.

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment.

Burns MB, Montassier E, Abrahante J, Priya S, Niccum DE, Khoruts A, Starr TK, Knights D, Blekhman R.

PLoS Genet. 2018 Jun 20;14(6):e1007376. doi: 10.1371/journal.pgen.1007376. eCollection 2018 Jun.

7.

Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer.

Yuan C, Burns MB, Subramanian S, Blekhman R.

mSystems. 2018 May 15;3(3). pii: e00205-17. doi: 10.1128/mSystems.00205-17. eCollection 2018 May-Jun.

8.

Genetic and transcriptional analysis of human host response to healthy gut microbiota.

Richards AL, Burns MB, Alazizi A, Barreiro LB, Pique-Regi R, Blekhman R, Luca F.

mSystems. 2016 Jul-Aug;1(4). pii: e00067-16. Epub 2016 Aug 30.

9.

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns.

Gomez A, Petrzelkova KJ, Burns MB, Yeoman CJ, Amato KR, Vlckova K, Modry D, Todd A, Jost Robinson CA, Remis MJ, Torralba MG, Morton E, Umaña JD, Carbonero F, Gaskins HR, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Blekhman R.

Cell Rep. 2016 Mar 8;14(9):2142-2153. doi: 10.1016/j.celrep.2016.02.013. Epub 2016 Feb 25.

10.

The PKC/NF-κB signaling pathway induces APOBEC3B expression in multiple human cancers.

Leonard B, McCann JL, Starrett GJ, Kosyakovsky L, Luengas EM, Molan AM, Burns MB, McDougle RM, Parker PJ, Brown WL, Harris RS.

Cancer Res. 2015 Nov 1;75(21):4538-47. doi: 10.1158/0008-5472.CAN-15-2171-T. Epub 2015 Sep 29.

11.

Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment.

Burns MB, Lynch J, Starr TK, Knights D, Blekhman R.

Genome Med. 2015 Jun 24;7(1):55. doi: 10.1186/s13073-015-0177-8. eCollection 2015.

12.

Social networks predict gut microbiome composition in wild baboons.

Tung J, Barreiro LB, Burns MB, Grenier JC, Lynch J, Grieneisen LE, Altmann J, Alberts SC, Blekhman R, Archie EA.

Elife. 2015 Mar 16;4. doi: 10.7554/eLife.05224.

13.

APOBEC3B: pathological consequences of an innate immune DNA mutator.

Burns MB, Leonard B, Harris RS.

Biomed J. 2015 Mar-Apr;38(2):102-10. doi: 10.4103/2319-4170.148904. Review.

14.

Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers.

Sieuwerts AM, Willis S, Burns MB, Look MP, Meijer-Van Gelder ME, Schlicker A, Heideman MR, Jacobs H, Wessels L, Leyland-Jones B, Gray KP, Foekens JA, Harris RS, Martens JW.

Horm Cancer. 2014 Dec;5(6):405-13. doi: 10.1007/s12672-014-0196-8. Epub 2014 Aug 15.

15.

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Leonard B, Hart SN, Burns MB, Carpenter MA, Temiz NA, Rathore A, Vogel RI, Nikas JB, Law EK, Brown WL, Li Y, Zhang Y, Maurer MJ, Oberg AL, Cunningham JM, Shridhar V, Bell DA, April C, Bentley D, Bibikova M, Cheetham RK, Fan JB, Grocock R, Humphray S, Kingsbury Z, Peden J, Chien J, Swisher EM, Hartmann LC, Kalli KR, Goode EL, Sicotte H, Kaufmann SH, Harris RS.

Cancer Res. 2013 Dec 15;73(24):7222-31. doi: 10.1158/0008-5472.CAN-13-1753. Epub 2013 Oct 23.

16.

Evidence for APOBEC3B mutagenesis in multiple human cancers.

Burns MB, Temiz NA, Harris RS.

Nat Genet. 2013 Sep;45(9):977-83. doi: 10.1038/ng.2701. Epub 2013 Jul 14.

17.

APOBEC3B is an enzymatic source of mutation in breast cancer.

Burns MB, Lackey L, Carpenter MA, Rathore A, Land AM, Leonard B, Refsland EW, Kotandeniya D, Tretyakova N, Nikas JB, Yee D, Temiz NA, Donohue DE, McDougle RM, Brown WL, Law EK, Harris RS.

Nature. 2013 Feb 21;494(7437):366-70. doi: 10.1038/nature11881. Epub 2013 Feb 6. Erratum in: Nature. 2013 Oct 24;502(7472):580.

18.

Extensive somatic L1 retrotransposition in colorectal tumors.

Solyom S, Ewing AD, Rahrmann EP, Doucet T, Nelson HH, Burns MB, Harris RS, Sigmon DF, Casella A, Erlanger B, Wheelan S, Upton KR, Shukla R, Faulkner GJ, Largaespada DA, Kazazian HH Jr.

Genome Res. 2012 Dec;22(12):2328-38. doi: 10.1101/gr.145235.112. Epub 2012 Sep 11.

19.

APOBEC3 proteins mediate the clearance of foreign DNA from human cells.

Stenglein MD, Burns MB, Li M, Lengyel J, Harris RS.

Nat Struct Mol Biol. 2010 Feb;17(2):222-9. doi: 10.1038/nsmb.1744. Epub 2010 Jan 10.

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