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Items: 1 to 20 of 39

1.

Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels.

Orata FD, Meier-Kolthoff JP, Sauvageau D, Stein LY.

Front Microbiol. 2018 Dec 19;9:3162. doi: 10.3389/fmicb.2018.03162. eCollection 2018.

2.

Genome-Based Taxonomic Classification of the Phylum Actinobacteria.

Nouioui I, Carro L, García-López M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Göker M.

Front Microbiol. 2018 Aug 22;9:2007. doi: 10.3389/fmicb.2018.02007. eCollection 2018.

3.

Investigation of recombination-intense viral groups and their genes in the Earth's virome.

Meier-Kolthoff JP, Uchiyama J, Yahara H, Paez-Espino D, Yahara K.

Sci Rep. 2018 Jul 31;8(1):11496. doi: 10.1038/s41598-018-29272-2.

4.

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes.

Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M.

Front Microbiol. 2018 Feb 21;9:304. doi: 10.3389/fmicb.2018.00304. eCollection 2018.

5.

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.

Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Göker M, Goodfellow M.

Sci Rep. 2018 Jan 11;8(1):525. doi: 10.1038/s41598-017-17392-0.

6.

Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae.

Montero-Calasanz MDC, Meier-Kolthoff JP, Zhang DF, Yaramis A, Rohde M, Woyke T, Kyrpides NC, Schumann P, Li WJ, Göker M.

Front Microbiol. 2017 Dec 19;8:2501. doi: 10.3389/fmicb.2017.02501. eCollection 2017.

7.

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.

Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Spröer C, Gram L, Overmann J.

Genome Biol Evol. 2017 Dec 1;9(12):3297-3311. doi: 10.1093/gbe/evx249.

8.

VICTOR: genome-based phylogeny and classification of prokaryotic viruses.

Meier-Kolthoff JP, Göker M.

Bioinformatics. 2017 Nov 1;33(21):3396-3404. doi: 10.1093/bioinformatics/btx440.

9.

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli.

Donner J, Reck M, Bunk B, Jarek M, App CB, Meier-Kolthoff JP, Overmann J, Müller R, Kirschning A, Wagner-Döbler I.

mSphere. 2017 Sep 27;2(5). pii: e00375-17. doi: 10.1128/mSphereDirect.00375-17. eCollection 2017 Sep-Oct.

10.

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC.

Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12.

11.

Correction for Barka et al., Taxonomy, Physiology, and Natural Products of Actinobacteria.

Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clément C, Ouhdouch Y, van Wezel GP.

Microbiol Mol Biol Rev. 2016 Nov 9;80(4):iii. doi: 10.1128/MMBR.00044-16. Print 2016 Dec. No abstract available.

12.

Sequence-based analysis of the genus Ruminococcus resolves its phylogeny and reveals strong host association.

La Reau AJ, Meier-Kolthoff JP, Suen G.

Microb Genom. 2016 Dec 12;2(12):e000099. doi: 10.1099/mgen.0.000099. eCollection 2016 Dec.

13.

Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio.

Ahn AC, Meier-Kolthoff JP, Overmars L, Richter M, Woyke T, Sorokin DY, Muyzer G.

PLoS One. 2017 Mar 10;12(3):e0173517. doi: 10.1371/journal.pone.0173517. eCollection 2017.

14.

Streptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil.

Röttig A, Atasayar E, Meier-Kolthoff JP, Spröer C, Schumann P, Schauer J, Steinbüchel A.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1676-1682. doi: 10.1099/ijsem.0.001839. Epub 2017 Jun 20.

PMID:
28141499
15.

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats.

Simon M, Scheuner C, Meier-Kolthoff JP, Brinkhoff T, Wagner-Döbler I, Ulbrich M, Klenk HP, Schomburg D, Petersen J, Göker M.

ISME J. 2017 Jun;11(6):1483-1499. doi: 10.1038/ismej.2016.198. Epub 2017 Jan 20.

16.

Genome-Based Taxonomic Classification of Bacteroidetes.

Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M.

Front Microbiol. 2016 Dec 20;7:2003. doi: 10.3389/fmicb.2016.02003. eCollection 2016. Erratum in: Front Microbiol. 2018 Feb 21;9:304.

17.

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets.

Blanco-Míguez A, Meier-Kolthoff JP, Gutiérrez-Jácome A, Göker M, Fdez-Riverola F, Sánchez B, Lourenço A.

PLoS Comput Biol. 2016 Dec 29;12(12):e1005271. doi: 10.1371/journal.pcbi.1005271. eCollection 2016 Dec.

18.

Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T.

Nat Microbiol. 2016 Oct 17;1(11):16219. doi: 10.1038/nmicrobiol.2016.219. No abstract available.

PMID:
27748770
19.

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T.

Nat Microbiol. 2016 Aug 8;1(10):16131. doi: 10.1038/nmicrobiol.2016.131. Erratum in: Nat Microbiol. 2016 Oct 17;1(11):16219.

PMID:
27670113
20.

Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp. nov. and Frankia elaeagni sp. nov.

Nouioui I, Ghodhbane-Gtari F, Montero-Calasanz MD, Göker M, Meier-Kolthoff JP, Schumann P, Rohde M, Goodfellow M, Fernandez MP, Normand P, Tisa LS, Klenk HP, Gtari M.

Int J Syst Evol Microbiol. 2016 Dec;66(12):5201-5210. doi: 10.1099/ijsem.0.001496. Epub 2016 Sep 12.

PMID:
27624710

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