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Genomic hallmarks of localized, non-indolent prostate cancer.
Fraser M, Sabelnykova VY, Yamaguchi TN, Heisler LE, Livingstone J, Huang V, Shiah YJ, Yousif F, Lin X, Masella AP, Fox NS, Xie M, Prokopec SD, Berlin A, Lalonde E, Ahmed M, Trudel D, Luo X, Beck TA, Meng A, Zhang J, D'Costa A, Denroche RE, Kong H, Espiritu SM, Chua ML, Wong A, Chong T, Sam M, Johns J, Timms L, Buchner NB, Orain M, Picard V, Hovington H, Murison A, Kron K, Harding NJ, P'ng C, Houlahan KE, Chu KC, Lo B, Nguyen F, Li CH, Sun RX, de Borja R, Cooper CI, Hopkins JF, Govind SK, Fung C, Waggott D, Green J, Haider S, Chan-Seng-Yue MA, Jung E, Wang Z, Bergeron A, Dal Pra A, Lacombe L, Collins CC, Sahinalp C, Lupien M, Fleshner NE, He HH, Fradet Y, Tetu B, van der Kwast T, McPherson JD, Bristow RG, Boutros PC. Fraser M, et al. Among authors: masella ap. Nature. 2017 Jan 19;541(7637):359-364. doi: 10.1038/nature20788. Epub 2017 Jan 9. Nature. 2017. PMID: 28068672
PANDAseq: paired-end assembler for illumina sequences.
Masella AP, Bartram AK, Truszkowski JM, Brown DG, Neufeld JD. Masella AP, et al. BMC Bioinformatics. 2012 Feb 14;13:31. doi: 10.1186/1471-2105-13-31. BMC Bioinformatics. 2012. PMID: 22333067 Free PMC article.
BAMQL: a query language for extracting reads from BAM files.
Masella AP, Lalansingh CM, Sivasundaram P, Fraser M, Bristow RG, Boutros PC. Masella AP, et al. BMC Bioinformatics. 2016 Aug 11;17:305. doi: 10.1186/s12859-016-1162-y. BMC Bioinformatics. 2016. PMID: 27516195 Free PMC article.
AXIOME: automated exploration of microbial diversity.
Lynch MDj, Masella AP, Hall MW, Bartram AK, Neufeld JD. Lynch MDj, et al. Among authors: masella ap. Gigascience. 2013 Mar 13;2(1):3. doi: 10.1186/2047-217X-2-3. Gigascience. 2013. PMID: 23587322 Free PMC article.