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Page 1
M4T: a comparative protein structure modeling server.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W363-8. doi: 10.1093/nar/gkm341. Epub 2007 May 21.
Nucleic Acids Res. 2007.
PMID: 17517764
Free PMC article.
Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.
Fernandez-Fuentes N, Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A.
Fernandez-Fuentes N, et al. Among authors: madrid aliste cj.
Bioinformatics. 2007 Oct 1;23(19):2558-65. doi: 10.1093/bioinformatics/btm377. Epub 2007 Sep 6.
Bioinformatics. 2007.
PMID: 17823132
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Computational analysis and experimental validation of gene predictions in Toxoplasma gondii.
Dybas JM, Madrid-Aliste CJ, Che FY, Nieves E, Rykunov D, Angeletti RH, Weiss LM, Kim K, Fiser A.
Dybas JM, et al. Among authors: madrid aliste cj.
PLoS One. 2008;3(12):e3899. doi: 10.1371/journal.pone.0003899. Epub 2008 Dec 9.
PLoS One. 2008.
PMID: 19065262
Free PMC article.
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EPIC-DB: a proteomics database for studying Apicomplexan organisms.
Madrid-Aliste CJ, Dybas JM, Angeletti RH, Weiss LM, Kim K, Simon I, Fiser A.
Madrid-Aliste CJ, et al.
BMC Genomics. 2009 Jan 21;10:38. doi: 10.1186/1471-2164-10-38.
BMC Genomics. 2009.
PMID: 19159464
Free PMC article.
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MMM: a sequence-to-structure alignment protocol.
Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A.
Rai BK, et al. Among authors: madrid aliste cj.
Bioinformatics. 2006 Nov 1;22(21):2691-2. doi: 10.1093/bioinformatics/btl449. Epub 2006 Aug 23.
Bioinformatics. 2006.
PMID: 16928737
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Improved scoring function for comparative modeling using the M4T method.
Rykunov D, Steinberger E, Madrid-Aliste CJ, Fiser A.
Rykunov D, et al. Among authors: madrid aliste cj.
J Struct Funct Genomics. 2009 Mar;10(1):95-9. doi: 10.1007/s10969-008-9044-9. Epub 2008 Nov 5.
J Struct Funct Genomics. 2009.
PMID: 18985440
Free PMC article.
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