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Serratia sp. strain A4-2 16S ribosomal RNA gene, partial sequence [Serratia sp.]

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Items: 1 to 20 of 52

1.

An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Zhang F, Wu Y, Norton I, Rigolo L, Rathi Y, Makris N, O'Donnell LJ.

Neuroimage. 2018 Oct 1;179:429-447. doi: 10.1016/j.neuroimage.2018.06.027. Epub 2018 Jun 18.

PMID:
29920375
2.

Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.

Wu Y, Zhang F, Makris N, Ning Y, Norton I, She S, Peng H, Rathi Y, Feng Y, Wu H, O'Donnell LJ.

Neuroimage. 2018 Nov 1;181:16-29. doi: 10.1016/j.neuroimage.2018.06.019. Epub 2018 Jul 6.

PMID:
29890329
3.

Free water modeling of peritumoral edema using multi-fiber tractography: Application to tracking the arcuate fasciculus for neurosurgical planning.

Gong S, Zhang F, Norton I, Essayed WI, Unadkat P, Rigolo L, Pasternak O, Rathi Y, Hou L, Golby AJ, O'Donnell LJ.

PLoS One. 2018 May 10;13(5):e0197056. doi: 10.1371/journal.pone.0197056. eCollection 2018.

4.

Influence of the size and curvedness of neural projections on the orientationally averaged diffusion MR signal.

Özarslan E, Yolcu C, Herberthson M, Knutsson H, Westin CF.

Front Phys. 2018;6. pii: 17. doi: 10.3389/fphy.2018.00017. Epub 2018 Mar 2.

5.

Bayesian uncertainty quantification in linear models for diffusion MRI.

Sjölund J, Eklund A, Özarslan E, Herberthson M, Bånkestad M, Knutsson H.

Neuroimage. 2018 Jul 15;175:272-285. doi: 10.1016/j.neuroimage.2018.03.059. Epub 2018 Mar 29.

PMID:
29604453
6.

Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.

Zhang F, Wu W, Ning L, McAnulty G, Waber D, Gagoski B, Sarill K, Hamoda HM, Song Y, Cai W, Rathi Y, O'Donnell LJ.

Neuroimage. 2018 May 1;171:341-354. doi: 10.1016/j.neuroimage.2018.01.006. Epub 2018 Jan 11.

PMID:
29337279
7.

Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects.

Albi A, Meola A, Zhang F, Kahali P, Rigolo L, Tax CMW, Ciris PA, Essayed WI, Unadkat P, Norton I, Rathi Y, Olubiyi O, Golby AJ, O'Donnell LJ.

J Neuroimaging. 2018 Mar;28(2):173-182. doi: 10.1111/jon.12485. Epub 2018 Jan 10.

PMID:
29319208
8.

Advances in computational and statistical diffusion MRI.

O'Donnell LJ, Daducci A, Wassermann D, Lenglet C.

NMR Biomed. 2017 Nov 14. doi: 10.1002/nbm.3805. [Epub ahead of print]

PMID:
29134716
9.

SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research.

Norton I, Essayed W, Zhang F, Pujol S, Yarmarkovich A, Golby AJ, Kindlmann G, Wassermann D, Estepar RSJ, Rathi Y, Pieper S, Kikinis R, Johnson HJ, Westin CF, O'Donnell LJ.

Cancer Res. 2017 Nov 1;77(21):e101-e103. doi: 10.1158/0008-5472.CAN-17-0332. Erratum in: Cancer Res. 2018 May 1;78(9):2445.

10.

Whole brain white matter connectivity analysis using machine learning: An application to autism.

Zhang F, Savadjiev P, Cai W, Song Y, Rathi Y, Tunç B, Parker D, Kapur T, Schultz RT, Makris N, Verma R, O'Donnell LJ.

Neuroimage. 2018 May 15;172:826-837. doi: 10.1016/j.neuroimage.2017.10.029. Epub 2017 Oct 25.

PMID:
29079524
11.

Performance of unscented Kalman filter tractography in edema: Analysis of the two-tensor model.

Liao R, Ning L, Chen Z, Rigolo L, Gong S, Pasternak O, Golby AJ, Rathi Y, O'Donnell LJ.

Neuroimage Clin. 2017 Jun 26;15:819-831. doi: 10.1016/j.nicl.2017.06.027. eCollection 2017.

12.

Liquid crystal phantom for validation of microscopic diffusion anisotropy measurements on clinical MRI systems.

Nilsson M, Larsson J, Lundberg D, Szczepankiewicz F, Witzel T, Westin CF, Bryskhe K, Topgaard D.

Magn Reson Med. 2018 Mar;79(3):1817-1828. doi: 10.1002/mrm.26814. Epub 2017 Jul 7.

13.

White matter tractography for neurosurgical planning: A topography-based review of the current state of the art.

Essayed WI, Zhang F, Unadkat P, Cosgrove GR, Golby AJ, O'Donnell LJ.

Neuroimage Clin. 2017 Jun 15;15:659-672. doi: 10.1016/j.nicl.2017.06.011. eCollection 2017. Review.

14.

Quantifying the brain's sheet structure with normalized convolution.

Tax CMW, Westin CF, Dela Haije T, Fuster A, Viergever MA, Calabrese E, Florack L, Leemans A.

Med Image Anal. 2017 Jul;39:162-177. doi: 10.1016/j.media.2017.03.007. Epub 2017 Apr 4.

15.

Effective potential for magnetic resonance measurements of restricted diffusion.

Özarslan E, Yolcu C, Herberthson M, Westin CF, Knutsson H.

Front Phys. 2017;5. pii: 68. doi: 10.3389/fphy.2017.00068. Epub 2017 Dec 19.

16.

Automated white matter fiber tract identification in patients with brain tumors.

O'Donnell LJ, Suter Y, Rigolo L, Kahali P, Zhang F, Norton I, Albi A, Olubiyi O, Meola A, Essayed WI, Unadkat P, Ciris PA, Wells WM 3rd, Rathi Y, Westin CF, Golby AJ.

Neuroimage Clin. 2016 Nov 25;13:138-153. eCollection 2017.

17.

Sheet Probability Index (SPI): Characterizing the geometrical organization of the white matter with diffusion MRI.

Tax CMW, Dela Haije T, Fuster A, Westin CF, Viergever MA, Florack L, Leemans A.

Neuroimage. 2016 Nov 15;142:260-279. doi: 10.1016/j.neuroimage.2016.07.042. Epub 2016 Jul 25.

18.

Q-space trajectory imaging for multidimensional diffusion MRI of the human brain.

Westin CF, Knutsson H, Pasternak O, Szczepankiewicz F, Özarslan E, van Westen D, Mattisson C, Bogren M, O'Donnell LJ, Kubicki M, Topgaard D, Nilsson M.

Neuroimage. 2016 Jul 15;135:345-62. doi: 10.1016/j.neuroimage.2016.02.039. Epub 2016 Feb 23.

19.

Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography.

Chen Z, Tie Y, Olubiyi O, Zhang F, Mehrtash A, Rigolo L, Kahali P, Norton I, Pasternak O, Rathi Y, Golby AJ, O'Donnell LJ.

Int J Comput Assist Radiol Surg. 2016 Aug;11(8):1475-86. doi: 10.1007/s11548-015-1344-5. Epub 2016 Jan 13.

20.

Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?

Ning L, Laun F, Gur Y, DiBella EV, Deslauriers-Gauthier S, Megherbi T, Ghosh A, Zucchelli M, Menegaz G, Fick R, St-Jean S, Paquette M, Aranda R, Descoteaux M, Deriche R, O'Donnell L, Rathi Y.

Med Image Anal. 2015 Dec;26(1):316-31. doi: 10.1016/j.media.2015.10.012. Epub 2015 Nov 10.

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