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Items: 12

1.

Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor) based on third-generation DNA sequencing and Hi-C analysis.

Lu S, Yang J, Dai X, Xie F, He J, Dong Z, Mao J, Liu G, Chang Z, Zhao R, Wan W, Zhang R, Li Y, Wang W, Li X.

Gigascience. 2019 Nov 1;8(11). pii: giz128. doi: 10.1093/gigascience/giz128.

2.

Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants.

He Y, Luo X, Zhou B, Hu T, Meng X, Audano PA, Kronenberg ZN, Eichler EE, Jin J, Guo Y, Yang Y, Qi X, Su B.

Nat Commun. 2019 Sep 17;10(1):4233. doi: 10.1038/s41467-019-12174-w.

3.

Transcriptome Profiling Provides Insight into the Genes in Carotenoid Biosynthesis during the Mesocarp and Seed Developmental Stages of Avocado (Persea americana).

Ge Y, Cheng Z, Si X, Ma W, Tan L, Zang X, Wu B, Xu Z, Wang N, Zhou Z, Lin X, Dong X, Zhan R.

Int J Mol Sci. 2019 Aug 23;20(17). pii: E4117. doi: 10.3390/ijms20174117.

4.

De Novo Genome Assembly and Comparative Genomics of the Barley Leaf Rust Pathogen Puccinia hordei Identifies Candidates for Three Avirulence Genes.

Chen J, Wu J, Zhang P, Dong C, Upadhyaya NM, Zhou Q, Dodds P, Park RF.

G3 (Bethesda). 2019 Oct 7;9(10):3263-3271. doi: 10.1534/g3.119.400450.

5.

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Oct;37(10):1155-1162. doi: 10.1038/s41587-019-0217-9. Epub 2019 Aug 12.

PMID:
31406327
6.

Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C.

Bai CM, Xin LS, Rosani U, Wu B, Wang QC, Duan XK, Liu ZH, Wang CM.

Gigascience. 2019 Jul 1;8(7). pii: giz067. doi: 10.1093/gigascience/giz067.

7.

Misassembly of long reads undermines de novo-assembled ethnicity-specific genomes: validation in a Chinese Han population.

Mai Z, Liu W, Ding W, Zhang G.

Hum Genet. 2019 Jul;138(7):757-769. doi: 10.1007/s00439-019-02032-6. Epub 2019 Jun 5.

PMID:
31168775
8.

Comparative transcriptome analyses of genes involved in sulforaphane metabolism at different treatment in Chinese kale using full-length transcriptome sequencing.

Wu Q, Wang J, Mao S, Xu H, Wu Q, Liang M, Yuan Y, Liu M, Huang K.

BMC Genomics. 2019 May 14;20(1):377. doi: 10.1186/s12864-019-5758-2.

9.
10.

IDP-denovo: de novo transcriptome assembly and isoform annotation by hybrid sequencing.

Fu S, Ma Y, Yao H, Xu Z, Chen S, Song J, Au KF.

Bioinformatics. 2018 Jul 1;34(13):2168-2176. doi: 10.1093/bioinformatics/bty098.

11.

Oxford Nanopore MinION Sequencing and Genome Assembly.

Lu H, Giordano F, Ning Z.

Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279. doi: 10.1016/j.gpb.2016.05.004. Epub 2016 Sep 17. Review.

12.

Long-read sequencing and de novo assembly of a Chinese genome.

Shi L, Guo Y, Dong C, Huddleston J, Yang H, Han X, Fu A, Li Q, Li N, Gong S, Lintner KE, Ding Q, Wang Z, Hu J, Wang D, Wang F, Wang L, Lyon GJ, Guan Y, Shen Y, Evgrafov OV, Knowles JA, Thibaud-Nissen F, Schneider V, Yu CY, Zhou L, Eichler EE, So KF, Wang K.

Nat Commun. 2016 Jun 30;7:12065. doi: 10.1038/ncomms12065.

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