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Items: 1 to 20 of 277

1.

Current cardiovascular scoring systems only tell part of the story.

Lister R, Graves C, Drake W.

Eur J Prev Cardiol. 2019 Dec 17:2047487319895870. doi: 10.1177/2047487319895870. [Epub ahead of print] No abstract available.

PMID:
31847561
2.

schex avoids overplotting for large single cell RNA-sequencing datasets.

Freytag S, Lister R.

Bioinformatics. 2019 Dec 3. pii: btz907. doi: 10.1093/bioinformatics/btz907. [Epub ahead of print]

PMID:
31794001
3.

A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation.

Grubman A, Chew G, Ouyang JF, Sun G, Choo XY, McLean C, Simmons RK, Buckberry S, Vargas-Landin DB, Poppe D, Pflueger J, Lister R, Rackham OJL, Petretto E, Polo JM.

Nat Neurosci. 2019 Dec;22(12):2087-2097. doi: 10.1038/s41593-019-0539-4.

PMID:
31768052
4.

Evolution of DNA Methylome Diversity in Eukaryotes.

de Mendoza A, Lister R, Bogdanovic O.

J Mol Biol. 2019 Nov 11. pii: S0022-2836(19)30659-X. doi: 10.1016/j.jmb.2019.11.003. [Epub ahead of print] Review.

PMID:
31726061
5.

Harnessing targeted DNA methylation and demethylation using dCas9.

Pflueger C, Swain T, Lister R.

Essays Biochem. 2019 Dec 20;63(6):813-825. doi: 10.1042/EBC20190029.

PMID:
31724704
6.

Noble gases confirm plume-related mantle degassing beneath Southern Africa.

Gilfillan SMV, Györe D, Flude S, Johnson G, Bond CE, Hicks N, Lister R, Jones DG, Kremer Y, Haszeldine RS, Stuart FM.

Nat Commun. 2019 Nov 5;10(1):5028. doi: 10.1038/s41467-019-12944-6.

7.

Convergent evolution of a vertebrate-like methylome in a marine sponge.

de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U, Hejnol A, Adamska M, Degnan BM, Degnan SM, Lister R.

Nat Ecol Evol. 2019 Oct;3(10):1464-1473. doi: 10.1038/s41559-019-0983-2. Epub 2019 Sep 26.

PMID:
31558833
8.

The weeks before 100 persecutory delusions: the presence of many potential contributory causal factors.

Freeman D, Morrison A, Bird JC, Chadwick E, Bold E, Taylor KM, Diamond R, Collett N, Černis E, Isham L, Lister R, Kirkham M, Teale AL, Twivy E, Waite F.

BJPsych Open. 2019 Sep 17;5(5):e83. doi: 10.1192/bjo.2019.67.

9.

Retention of paternal DNA methylome in the developing zebrafish germline.

Skvortsova K, Tarbashevich K, Stehling M, Lister R, Irimia M, Raz E, Bogdanovic O.

Nat Commun. 2019 Jul 11;10(1):3054. doi: 10.1038/s41467-019-10895-6.

10.

Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family.

de Mendoza A, Pflueger J, Lister R.

Genome Res. 2019 Aug;29(8):1277-1286. doi: 10.1101/gr.243774.118. Epub 2019 Jun 25.

PMID:
31239280
11.

LINE-1 Evasion of Epigenetic Repression in Humans.

Sanchez-Luque FJ, Kempen MHC, Gerdes P, Vargas-Landin DB, Richardson SR, Troskie RL, Jesuadian JS, Cheetham SW, Carreira PE, Salvador-Palomeque C, García-Cañadas M, Muñoz-Lopez M, Sanchez L, Lundberg M, Macia A, Heras SR, Brennan PM, Lister R, Garcia-Perez JL, Ewing AD, Faulkner GJ.

Mol Cell. 2019 Aug 8;75(3):590-604.e12. doi: 10.1016/j.molcel.2019.05.024. Epub 2019 Jun 20.

PMID:
31230816
12.

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions.

Srivastava A, Karpievitch YV, Eichten SR, Borevitz JO, Lister R.

BMC Bioinformatics. 2019 May 16;20(1):253. doi: 10.1186/s12859-019-2845-y.

13.

The Dunn Worry Questionnaire and the Paranoia Worries Questionnaire: new assessments of worry.

Freeman D, Bird JC, Loe BS, Kingdon D, Startup H, Clark DM, Ehlers A, Černis E, Wingham G, Evans N, Lister R, Pugh K, Cordwell J, Dunn G.

Psychol Med. 2019 Apr 5:1-10. doi: 10.1017/S0033291719000588. [Epub ahead of print]

PMID:
30947766
14.
15.

Amphioxus functional genomics and the origins of vertebrate gene regulation.

Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M.

Nature. 2018 Dec;564(7734):64-70. doi: 10.1038/s41586-018-0734-6. Epub 2018 Nov 21.

16.

A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs.

Pflueger C, Tan D, Swain T, Nguyen T, Pflueger J, Nefzger C, Polo JM, Ford E, Lister R.

Genome Res. 2018 Aug;28(8):1193-1206. doi: 10.1101/gr.233049.117. Epub 2018 Jun 15.

17.

Author Correction: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.

de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Li H, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R.

Nat Commun. 2018 May 1;9(1):1811. doi: 10.1038/s41467-018-04260-2.

18.

Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.

de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Li H, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R.

Nat Commun. 2018 Apr 9;9(1):1341. doi: 10.1038/s41467-018-03724-9. Erratum in: Nat Commun. 2018 May 1;9(1):1811.

19.

Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data.

Stuart T, Buckberry S, Lister R.

Methods Mol Biol. 2018;1767:299-310. doi: 10.1007/978-1-4939-7774-1_17.

PMID:
29524143
20.

Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis.

Vargas-Landin DB, Pflüger J, Lister R.

Methods Mol Biol. 2018;1767:291-298. doi: 10.1007/978-1-4939-7774-1_16.

PMID:
29524142

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