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Items: 1 to 20 of 229

1.

Comprehensive and Empirical Evaluation of Machine Learning Algorithms for Small Molecule LC Retention Time Prediction.

Bouwmeester R, Martens L, Degroeve S.

Anal Chem. 2019 Feb 14. doi: 10.1021/acs.analchem.8b05820. [Epub ahead of print]

PMID:
30702864
2.

The study of degradation mechanisms of glyco-engineered plant produced anti-rabies monoclonal antibodies E559 and 62-71-3.

Buthelezi SG, Dirr HW, Chakauya E, Chikwamba R, Martens L, Tsekoa TL, Vandermarliere E, Stoychev SH.

PLoS One. 2018 Dec 20;13(12):e0209373. doi: 10.1371/journal.pone.0209373. eCollection 2018.

3.

Scop3D: Online Visualization of Mutation Rates on Protein Structure.

Kreft L, Turan D, Hulstaert N, Botzki A, Martens L, Vandermarliere E.

J Proteome Res. 2019 Feb 1;18(2):765-769. doi: 10.1021/acs.jproteome.8b00681. Epub 2018 Dec 17.

PMID:
30540477
4.

Update on the moFF Algorithm for Label-Free Quantitative Proteomics.

Argentini A, Staes A, Grüning B, Mehta S, Easterly C, Griffin TJ, Jagtap P, Impens F, Martens L.

J Proteome Res. 2019 Feb 1;18(2):728-731. doi: 10.1021/acs.jproteome.8b00708. Epub 2018 Dec 14.

PMID:
30511867
5.

Unipept 4.0: Functional Analysis of Metaproteome Data.

Gurdeep Singh R, Tanca A, Palomba A, Van der Jeugt F, Verschaffelt P, Uzzau S, Martens L, Dawyndt P, Mesuere B.

J Proteome Res. 2019 Feb 1;18(2):606-615. doi: 10.1021/acs.jproteome.8b00716. Epub 2018 Dec 4.

PMID:
30465426
6.

Surveillance of Myelodysplastic Syndrome via Migration Analyses of Blood Neutrophils: A Potential Prognostic Tool.

Schuster M, Moeller M, Bornemann L, Bessen C, Sobczak C, Schmitz S, Witjes L, Kruithoff K, Kohn C, Just O, Kündgen A, Pundt N, Pelzer B, Ampe C, Van Troys M, Nusch A, Haas R, Germing U, Martens L, Jöckel KH, Gunzer M.

J Immunol. 2018 Dec 15;201(12):3546-3557. doi: 10.4049/jimmunol.1801071. Epub 2018 Nov 16.

PMID:
30446567
7.

LNCipedia 5: towards a reference set of human long non-coding RNAs.

Volders PJ, Anckaert J, Verheggen K, Nuytens J, Martens L, Mestdagh P, Vandesompele J.

Nucleic Acids Res. 2019 Jan 8;47(D1):D135-D139. doi: 10.1093/nar/gky1031.

8.

Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins.

Gouma S, Vermeire T, Van Gucht S, Martens L, Hutse V, Cremer J, Rota PA, Leroux-Roels G, Koopmans M, Binnendijk RV, Vandermarliere E.

Sci Rep. 2018 Sep 6;8(1):13337. doi: 10.1038/s41598-018-31630-z.

9.

Data-Driven Rescoring of Metabolite Annotations Significantly Improves Sensitivity.

C Silva AS, Palmer A, Kovalev V, Tarasov A, Alexandrov T, Martens L, Degroeve S.

Anal Chem. 2018 Oct 2;90(19):11636-11642. doi: 10.1021/acs.analchem.8b03224. Epub 2018 Sep 21.

PMID:
30188119
10.

DoRes within CellMissy: dose-response analysis on cell migration and related data.

Sergeant G, Martens L, Van Troys M, Masuzzo P.

Bioinformatics. 2019 Feb 15;35(4):696-697. doi: 10.1093/bioinformatics/bty634.

PMID:
30052834
11.

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, Martens L, Rodriguez-Navarro S, Moreno-Manzano V, Conesa A.

Genome Res. 2018 Jul;28(7):1096. doi: 10.1101/gr.239137.118. No abstract available.

12.

Cross-linked peptide identification: A computational forest of algorithms.

Yılmaz Ş, Shiferaw GA, Rayo J, Economou A, Martens L, Vandermarliere E.

Mass Spectrom Rev. 2018 Nov;37(6):738-749. doi: 10.1002/mas.21559. Epub 2018 Mar 12. Review.

PMID:
29529716
13.

Analysis of Invasion Dynamics of Matrix-Embedded Cells in a Multisample Format.

Van Troys M, Masuzzo P, Huyck L, Bakkali K, Waterschoot D, Martens L, Ampe C.

Methods Mol Biol. 2018;1749:79-117. doi: 10.1007/978-1-4939-7701-7_9.

PMID:
29525993
14.

The mutational landscape of MYCN, Lin28b and ALKF1174L driven murine neuroblastoma mimics human disease.

De Wilde B, Beckers A, Lindner S, Kristina A, De Preter K, Depuydt P, Mestdagh P, Sante T, Lefever S, Hertwig F, Peng Z, Shi LM, Lee S, Vandermarliere E, Martens L, Menten B, Schramm A, Fischer M, Schulte J, Vandesompele J, Speleman F.

Oncotarget. 2017 Dec 22;9(9):8334-8349. doi: 10.18632/oncotarget.23614. eCollection 2018 Feb 2.

15.

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, Martens L, Rodriguez-Navarro S, Moreno-Manzano V, Conesa A.

Genome Res. 2018 Feb 9. doi: 10.1101/gr.222976.117. [Epub ahead of print] Erratum in: Genome Res. 2018 Jul;28(7):1096.

16.

MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.

Muth T, Kohrs F, Heyer R, Benndorf D, Rapp E, Reichl U, Martens L, Renard BY.

Anal Chem. 2018 Jan 2;90(1):685-689. doi: 10.1021/acs.analchem.7b03544. Epub 2017 Dec 19.

17.

An Accessible Proteogenomics Informatics Resource for Cancer Researchers.

Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ.

Cancer Res. 2017 Nov 1;77(21):e43-e46. doi: 10.1158/0008-5472.CAN-17-0331.

18.

The online Tabloid Proteome: an annotated database of protein associations.

Gupta S, Turan D, Tavernier J, Martens L.

Nucleic Acids Res. 2018 Jan 4;46(D1):D581-D585. doi: 10.1093/nar/gkx930.

19.

Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows.

Verheggen K, Raeder H, Berven FS, Martens L, Barsnes H, Vaudel M.

Mass Spectrom Rev. 2017 Sep 13. doi: 10.1002/mas.21543. [Epub ahead of print] Review.

PMID:
28902424
20.

Quality control in mass spectrometry-based proteomics.

Bittremieux W, Tabb DL, Impens F, Staes A, Timmerman E, Martens L, Laukens K.

Mass Spectrom Rev. 2018 Sep;37(5):697-711. doi: 10.1002/mas.21544. Epub 2017 Sep 7. Review.

PMID:
28802010

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