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Items: 1 to 20 of 40

1.

Differential regulation of RNA polymerase III genes during liver regeneration.

Yeganeh M, Praz V, Carmeli C, Villeneuve D, Rib L, Guex N, Herr W, Delorenzi M, Hernandez N; CycliX consortium .

Nucleic Acids Res. 2018 Dec 29. doi: 10.1093/nar/gky1282. [Epub ahead of print]

PMID:
30597109
2.

Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development.

Fabre PJ, Leleu M, Mascrez B, Lo Giudice Q, Cobb J, Duboule D.

BMC Biol. 2018 Sep 18;16(1):101. doi: 10.1186/s12915-018-0570-z.

3.

Cycles of gene expression and genome response during mammalian tissue regeneration.

Rib L, Villeneuve D, Minocha S, Praz V, Hernandez N, Guex N, Herr W; CycliX Consortium.

Epigenetics Chromatin. 2018 Sep 12;11(1):52. doi: 10.1186/s13072-018-0222-0.

4.

AMPK promotes survival of c-Myc-positive melanoma cells by suppressing oxidative stress.

Kfoury A, Armaro M, Collodet C, Sordet-Dessimoz J, Giner MP, Christen S, Moco S, Leleu M, de Leval L, Koch U, Trumpp A, Sakamoto K, Beermann F, Radtke F.

EMBO J. 2018 Mar 1;37(5). pii: e97673. doi: 10.15252/embj.201797673. Epub 2018 Feb 12.

PMID:
29440228
5.

Large scale genomic reorganization of topological domains at the HoxD locus.

Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L, Duboule D.

Genome Biol. 2017 Aug 7;18(1):149. doi: 10.1186/s13059-017-1278-z.

6.

Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.

Mange F, Praz V, Migliavacca E, Willis IM, Schütz F, Hernandez N; CycliX Consortium.

Genome Res. 2017 Jun;27(6):973-984. doi: 10.1101/gr.217521.116. Epub 2017 Mar 24.

7.

Transcriptome-wide co-expression analysis identifies LRRC2 as a novel mediator of mitochondrial and cardiac function.

McDermott-Roe C, Leleu M, Rowe GC, Palygin O, Bukowy JD, Kuo J, Rech M, Hermans-Beijnsberger S, Schaefer S, Adami E, Creemers EE, Heinig M, Schroen B, Arany Z, Petretto E, Geurts AM.

PLoS One. 2017 Feb 3;12(2):e0170458. doi: 10.1371/journal.pone.0170458. eCollection 2017.

8.

A role for mitotic bookmarking of SOX2 in pluripotency and differentiation.

Deluz C, Friman ET, Strebinger D, Benke A, Raccaud M, Callegari A, Leleu M, Manley S, Suter DM.

Genes Dev. 2016 Nov 15;30(22):2538-2550. Epub 2016 Dec 5.

9.

Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.

Loviglio MN, Beck CR, White JJ, Leleu M, Harel T, Guex N, Niknejad A, Bi W, Chen ES, Crespo I, Yan J, Charng WL, Gu S, Fang P, Coban-Akdemir Z, Shaw CA, Jhangiani SN, Muzny DM, Gibbs RA, Rougemont J, Xenarios I, Lupski JR, Reymond A.

Genome Med. 2016 Nov 1;8(1):105.

10.

Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypes.

Loviglio MN, Leleu M, Männik K, Passeggeri M, Giannuzzi G, van der Werf I, Waszak SM, Zazhytska M, Roberts-Caldeira I, Gheldof N, Migliavacca E, Alfaiz AA, Hippolyte L, Maillard AM; 2p15 Consortium; 16p11.2 Consortium, Van Dijck A, Kooy RF, Sanlaville D, Rosenfeld JA, Shaffer LG, Andrieux J, Marshall C, Scherer SW, Shen Y, Gusella JF, Thorsteinsdottir U, Thorleifsson G, Dermitzakis ET, Deplancke B, Beckmann JS, Rougemont J, Jacquemont S, Reymond A.

Mol Psychiatry. 2017 Jun;22(6):836-849. doi: 10.1038/mp.2016.84. Epub 2016 May 31.

11.

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

SIB Swiss Institute of Bioinformatics Members.

Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28.

12.

Oestrogen reporter transgenic medaka for non-invasive evaluation of aromatase activity.

Spirhanzlova P, Leleu M, Sébillot A, Lemkine GF, Iguchi T, Demeneix BA, Tindall AJ.

Comp Biochem Physiol C Toxicol Pharmacol. 2016 Jan;179:64-71. doi: 10.1016/j.cbpc.2015.08.011. Epub 2015 Sep 6.

PMID:
26352216
13.

Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain.

Vieux-Rochas M, Fabre PJ, Leleu M, Duboule D, Noordermeer D.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4672-7. doi: 10.1073/pnas.1504783112. Epub 2015 Mar 30.

14.

Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci.

Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F, Duboule D.

Elife. 2014 Apr 29;3:e02557. doi: 10.7554/eLife.02557.

15.

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization.

Bonhoure N, Bounova G, Bernasconi D, Praz V, Lammers F, Canella D, Willis IM, Herr W, Hernandez N, Delorenzi M; CycliX Consortium.

Genome Res. 2014 Jul;24(7):1157-68. doi: 10.1101/gr.168260.113. Epub 2014 Apr 7.

16.

Genome-wide analysis of SREBP1 activity around the clock reveals its combined dependency on nutrient and circadian signals.

Gilardi F, Migliavacca E, Naldi A, Baruchet M, Canella D, Le Martelot G, Guex N, Desvergne B; CycliX Consortium.

PLoS Genet. 2014 Mar 6;10(3):e1004155. doi: 10.1371/journal.pgen.1004155. eCollection 2014 Mar.

17.

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.

David FP, Delafontaine J, Carat S, Ross FJ, Lefebvre G, Jarosz Y, Sinclair L, Noordermeer D, Rougemont J, Leleu M.

PLoS One. 2014 Jan 27;9(1):e85879. doi: 10.1371/journal.pone.0085879. eCollection 2014.

18.

Spatial separation of Xist RNA and polycomb proteins revealed by superresolution microscopy.

Cerase A, Smeets D, Tang YA, Gdula M, Kraus F, Spivakov M, Moindrot B, Leleu M, Tattermusch A, Demmerle J, Nesterova TB, Green C, Otte AP, Schermelleh L, Brockdorff N.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2235-40. doi: 10.1073/pnas.1312951111. Epub 2014 Jan 27.

19.

Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits.

Woltering JM, Noordermeer D, Leleu M, Duboule D.

PLoS Biol. 2014 Jan;12(1):e1001773. doi: 10.1371/journal.pbio.1001773. Epub 2014 Jan 21.

20.

Structural variation-associated expression changes are paralleled by chromatin architecture modifications.

Gheldof N, Witwicki RM, Migliavacca E, Leleu M, Didelot G, Harewood L, Rougemont J, Reymond A.

PLoS One. 2013 Nov 12;8(11):e79973. doi: 10.1371/journal.pone.0079973. eCollection 2013.

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