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Predicting the Effect of Mutations on Protein Folding and Protein-Protein Interactions.

Strokach A, Corbi-Verge C, Teyra J, Kim PM.

Methods Mol Biol. 2019;1851:1-17. doi: 10.1007/978-1-4939-8736-8_1.


Exosomes as a Communication Tool Between the Lymphatic System and Bladder Cancer.

Park RJ, Hong YJ, Wu Y, Kim PM, Hong YK.

Int Neurourol J. 2018 Sep;22(3):220-224. doi: 10.5213/inj.1836186.093. Epub 2018 Sep 28. No abstract available.


Endothelial lineage-specific interaction of Mycobacterium tuberculosis with the blood and lymphatic systems.

Kim PM, Lee JJ, Choi D, Eoh H, Hong YK.

Tuberculosis (Edinb). 2018 Jul;111:1-7. doi: 10.1016/ Epub 2018 May 4. Review.


The present and the future of motif-mediated protein-protein interactions.

Seo MH, Kim PM.

Curr Opin Struct Biol. 2018 Jun;50:162-170. doi: 10.1016/ Epub 2018 May 3. Review.


Dimethyl fumarate targets GAPDH and aerobic glycolysis to modulate immunity.

Kornberg MD, Bhargava P, Kim PM, Putluri V, Snowman AM, Putluri N, Calabresi PA, Snyder SH.

Science. 2018 Apr 27;360(6387):449-453. doi: 10.1126/science.aan4665. Epub 2018 Mar 29.


Bryostatin-1 alleviates experimental multiple sclerosis.

Kornberg MD, Smith MD, Shirazi HA, Calabresi PA, Snyder SH, Kim PM.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2186-2191. doi: 10.1073/pnas.1719902115. Epub 2018 Feb 12.


Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB.

Garton M, Nim S, Stone TA, Wang KE, Deber CM, Kim PM.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1505-1510. doi: 10.1073/pnas.1711837115. Epub 2018 Jan 29.


The Chemical Fluctuation Theorem governing gene expression.

Park SJ, Song S, Yang GS, Kim PM, Yoon S, Kim JH, Sung J.

Nat Commun. 2018 Jan 19;9(1):297. doi: 10.1038/s41467-017-02737-0.


A computational approach for designing D-proteins with non-canonical amino acid optimised binding affinity.

Garton M, Sayadi M, Kim PM.

PLoS One. 2017 Nov 6;12(11):e0187524. doi: 10.1371/journal.pone.0187524. eCollection 2017.


Comprehensive Analysis of the Human SH3 Domain Family Reveals a Wide Variety of Non-canonical Specificities.

Teyra J, Huang H, Jain S, Guan X, Dong A, Liu Y, Tempel W, Min J, Tong Y, Kim PM, Bader GD, Sidhu SS.

Structure. 2017 Oct 3;25(10):1598-1610.e3. doi: 10.1016/j.str.2017.07.017. Epub 2017 Sep 7.


Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding.

Najafabadi HS, Garton M, Weirauch MT, Mnaimneh S, Yang A, Kim PM, Hughes TR.

Genome Biol. 2017 Sep 6;18(1):167. doi: 10.1186/s13059-017-1287-y.


Data driven flexible backbone protein design.

Sun MGF, Kim PM.

PLoS Comput Biol. 2017 Aug 24;13(8):e1005722. doi: 10.1371/journal.pcbi.1005722. eCollection 2017 Aug.


Discovery of short linear motif-mediated interactions through phage display of intrinsically disordered regions of the human proteome.

Davey NE, Seo MH, Yadav VK, Jeon J, Nim S, Krystkowiak I, Blikstad C, Dong D, Markova N, Kim PM, Ivarsson Y.

FEBS J. 2017 Feb;284(3):485-498. doi: 10.1111/febs.13995. Epub 2017 Jan 18.


Strategies to Develop Inhibitors of Motif-Mediated Protein-Protein Interactions as Drug Leads.

Corbi-Verge C, Garton M, Nim S, Kim PM.

Annu Rev Pharmacol Toxicol. 2017 Jan 6;57:39-60. doi: 10.1146/annurev-pharmtox-010716-104805. Epub 2016 Sep 8. Review.


Protein engineering by highly parallel screening of computationally designed variants.

Sun MG, Seo MH, Nim S, Corbi-Verge C, Kim PM.

Sci Adv. 2016 Jul 20;2(7):e1600692. doi: 10.1126/sciadv.1600692. eCollection 2016 Jul.


PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies.

Jeon J, Arnold R, Singh F, Teyra J, Braun T, Kim PM.

BMC Bioinformatics. 2016 Apr 1;17:150. doi: 10.1186/s12859-016-1001-1.


Motif mediated protein-protein interactions as drug targets.

Corbi-Verge C, Kim PM.

Cell Commun Signal. 2016 Mar 2;14:8. doi: 10.1186/s12964-016-0131-4. Review.


Pooled screening for antiproliferative inhibitors of protein-protein interactions.

Nim S, Jeon J, Corbi-Verge C, Seo MH, Ivarsson Y, Moffat J, Tarasova N, Kim PM.

Nat Chem Biol. 2016 Apr;12(4):275-81. doi: 10.1038/nchembio.2026. Epub 2016 Feb 22.


A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes.

Na H, Laver JD, Jeon J, Singh F, Ancevicius K, Fan Y, Cao WX, Nie K, Yang Z, Luo H, Wang M, Rissland O, Westwood JT, Kim PM, Smibert CA, Lipshitz HD, Sidhu SS.

RNA. 2016 Apr;22(4):636-55. doi: 10.1261/rna.055186.115. Epub 2016 Feb 4.

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