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Items: 1 to 20 of 130

1.

An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping.

Zhou Q, Lim JQ, Sung WK, Li G.

BMC Bioinformatics. 2019 Jan 22;20(1):47. doi: 10.1186/s12859-018-2593-4.

2.

Publisher Correction: Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments.

Fanucchi S, Fok ET, Dalla E, Shibayama Y, Börner K, Chang EY, Stoychev S, Imakaev M, Grimm D, Wang KC, Li G, Sung WK, Mhlanga MM.

Nat Genet. 2019 Feb;51(2):364. doi: 10.1038/s41588-018-0341-3.

PMID:
30647470
3.

An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells.

Zhang Z, Chng KR, Lingadahalli S, Chen Z, Liu MH, Do HH, Cai S, Rinaldi N, Poh HM, Li G, Sung YY, Heng CL, Core LJ, Tan SK, Ruan X, Lis JT, Kellis M, Ruan Y, Sung WK, Cheung E.

Genome Res. 2019 Feb;29(2):223-235. doi: 10.1101/gr.230243.117. Epub 2019 Jan 3.

PMID:
30606742
4.

Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments.

Fanucchi S, Fok ET, Dalla E, Shibayama Y, Börner K, Chang EY, Stoychev S, Imakaev M, Grimm D, Wang KC, Li G, Sung WK, Mhlanga MM.

Nat Genet. 2019 Jan;51(1):138-150. doi: 10.1038/s41588-018-0298-2. Epub 2018 Dec 10. Erratum in: Nat Genet. 2019 Feb;51(2):364.

PMID:
30531872
5.
6.

Determining the Consistency of Resolved Triplets and Fan Triplets.

Jansson J, Lingas A, Rajaby R, Sung WK.

J Comput Biol. 2018 Jul;25(7):740-754. doi: 10.1089/cmb.2017.0256. Epub 2018 Feb 16.

PMID:
29451395
7.

Erratum: An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.

Li S, Koe CT, Tay ST, Tan ALK, Zhang S, Zhang Y, Tan P, Sung WK, Wang H.

Nat Commun. 2017 Oct 31;8(1):1298. doi: 10.1038/s41467-017-01017-1.

8.

An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.

Li S, Koe CT, Tay ST, Tan ALK, Zhang S, Zhang Y, Tan P, Sung WK, Wang H.

Nat Commun. 2017 Jul 25;8(1):122. doi: 10.1038/s41467-017-00172-9. Erratum in: Nat Commun. 2017 Oct 31;8(1):1298.

9.

Serine peptidase inhibitor Kazal type 1 (SPINK1) as novel downstream effector of the cadherin-17/β-catenin axis in hepatocellular carcinoma.

Shek FH, Luo R, Lam BYH, Sung WK, Lam TW, Luk JM, Leung MS, Chan KT, Wang HK, Chan CM, Poon RT, Lee NP.

Cell Oncol (Dordr). 2017 Oct;40(5):443-456. doi: 10.1007/s13402-017-0332-x. Epub 2017 Jun 19.

PMID:
28631187
10.

Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line.

Yusufi FNK, Lakshmanan M, Ho YS, Loo BLW, Ariyaratne P, Yang Y, Ng SK, Tan TRM, Yeo HC, Lim HL, Ng SW, Hiu AP, Chow CP, Wan C, Chen S, Teo G, Song G, Chin JX, Ruan X, Sung KWK, Hu WS, Yap MGS, Bardor M, Nagarajan N, Lee DY.

Cell Syst. 2017 May 24;4(5):530-542.e6. doi: 10.1016/j.cels.2017.04.009.

11.

BATVI: Fast, sensitive and accurate detection of virus integrations.

Tennakoon C, Sung WK.

BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):71. doi: 10.1186/s12859-017-1470-x.

12.

The spatial organization of intra-tumour heterogeneity and evolutionary trajectories of metastases in hepatocellular carcinoma.

Zhai W, Lim TK, Zhang T, Phang ST, Tiang Z, Guan P, Ng MH, Lim JQ, Yao F, Li Z, Ng PY, Yan J, Goh BK, Chung AY, Choo SP, Khor CC, Soon WW, Sung KW, Foo RS, Chow PK.

Nat Commun. 2017 Feb 27;8:4565. doi: 10.1038/ncomms14565.

13.

Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.

Jansson J, Rajaby R, Shen C, Sung WK.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jan-Feb;15(1):15-26. doi: 10.1109/TCBB.2016.2609923. Epub 2016 Sep 20.

PMID:
27662679
14.

Pan-omics analysis of biological data.

Sung WK.

Methods. 2016 Jun 1;102:1-2. doi: 10.1016/j.ymeth.2016.05.004. Epub 2016 May 11. No abstract available.

PMID:
27179955
15.

Structural variation detection using next-generation sequencing data: A comparative technical review.

Guan P, Sung WK.

Methods. 2016 Jun 1;102:36-49. doi: 10.1016/j.ymeth.2016.01.020. Epub 2016 Feb 1. Review.

PMID:
26845461
16.

Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny.

Maurer-Stroh S, Lee CW, Patel C, Lucero M, Nohynek H, Sung WK, Murad C, Ma J, Hibberd ML, Wong CW, Simões EA.

Diagn Microbiol Infect Dis. 2016 Mar;84(3):203-6. doi: 10.1016/j.diagmicrobio.2015.11.003. Epub 2015 Nov 6.

17.

An O(m log m)-Time Algorithm for Detecting Superbubbles.

Sung WK, Sadakane K, Shibuya T, Belorkar A, Pyrogova I.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):770-7. doi: 10.1109/TCBB.2014.2385696.

PMID:
26357315
18.

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.

Buisine N, Ruan X, Bilesimo P, Grimaldi A, Alfama G, Ariyaratne P, Mulawadi F, Chen J, Sung WK, Liu ET, Demeneix BA, Ruan Y, Sachs LM.

PLoS One. 2015 Sep 8;10(9):e0137526. doi: 10.1371/journal.pone.0137526. eCollection 2015.

19.

BatAlign: an incremental method for accurate alignment of sequencing reads.

Lim JQ, Tennakoon C, Guan P, Sung WK.

Nucleic Acids Res. 2015 Sep 18;43(16):e107. doi: 10.1093/nar/gkv533. Epub 2015 Jul 13.

20.

Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity.

Yao F, Kausalya JP, Sia YY, Teo AS, Lee WH, Ong AG, Zhang Z, Tan JH, Li G, Bertrand D, Liu X, Poh HM, Guan P, Zhu F, Pathiraja TN, Ariyaratne PN, Rao J, Woo XY, Cai S, Mulawadi FH, Poh WT, Veeravalli L, Chan CS, Lim SS, Leong ST, Neo SC, Choi PS, Chew EG, Nagarajan N, Jacques PÉ, So JB, Ruan X, Yeoh KG, Tan P, Sung WK, Hunziker W, Ruan Y, Hillmer AM.

Cell Rep. 2015 Jul 14;12(2):272-85. doi: 10.1016/j.celrep.2015.06.020. Epub 2015 Jul 2.

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