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Items: 18

1.

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere.

Carr SA, Jungbluth SP, Eloe-Fadrosh EA, Stepanauskas R, Woyke T, Rappé MS, Orcutt BN.

ISME J. 2019 Feb 7. doi: 10.1038/s41396-019-0352-9. [Epub ahead of print]

PMID:
30728468
2.

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.

Boyd JA, Jungbluth SP, Leu AO, Evans PN, Woodcroft BJ, Chadwick GL, Orphan VJ, Amend JP, Rappé MS, Tyson GW.

ISME J. 2019 Jan 16. doi: 10.1038/s41396-018-0343-2. [Epub ahead of print]

PMID:
30651609
3.

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Chen IA, Chu K, Palaniappan K, Pillay M, Ratner A, Huang J, Huntemann M, Varghese N, White JR, Seshadri R, Smirnova T, Kirton E, Jungbluth SP, Woyke T, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677. doi: 10.1093/nar/gky901.

4.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
5.

Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle.

Anantharaman K, Hausmann B, Jungbluth SP, Kantor RS, Lavy A, Warren LA, Rappé MS, Pester M, Loy A, Thomas BC, Banfield JF.

ISME J. 2018 Jun;12(7):1715-1728. doi: 10.1038/s41396-018-0078-0. Epub 2018 Feb 21.

6.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

7.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.

PMID:
28787424
8.

Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.

Jungbluth SP, Amend JP, Rappé MS.

Sci Data. 2017 Jul 4;4:170080. doi: 10.1038/sdata.2017.80.

9.

Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community.

Momper L, Jungbluth SP, Lee MD, Amend JP.

ISME J. 2017 Oct;11(10):2319-2333. doi: 10.1038/ismej.2017.94. Epub 2017 Jun 23.

10.

Opinion: Telepresence is a potentially transformative tool for field science.

Marlow J, Borrelli C, Jungbluth SP, Hoffman C, Marlow J, Girguis PR; AT-36 Team.

Proc Natl Acad Sci U S A. 2017 May 9;114(19):4841-4844. doi: 10.1073/pnas.1703514114. No abstract available.

11.

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.

Jungbluth SP, Glavina Del Rio T, Tringe SG, Stepanauskas R, Rappé MS.

PeerJ. 2017 Apr 6;5:e3134. doi: 10.7717/peerj.3134. eCollection 2017.

12.

Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.

Jungbluth SP, Amend JP, Rappé MS.

Sci Data. 2017 Mar 28;4:170037. doi: 10.1038/sdata.2017.37. Erratum in: Sci Data. 2017 Jul 04;4:170080.

13.

Viruses in the Oceanic Basement.

Nigro OD, Jungbluth SP, Lin HT, Hsieh CC, Miranda JA, Schvarcz CR, Rappé MS, Steward GF.

MBio. 2017 Mar 7;8(2). pii: e02129-16. doi: 10.1128/mBio.02129-16.

14.

Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids.

Robador A, LaRowe DE, Jungbluth SP, Lin HT, Rappé MS, Nealson KH, Amend JP.

Front Microbiol. 2016 Apr 5;7:454. doi: 10.3389/fmicb.2016.00454. eCollection 2016.

15.

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt.

Jungbluth SP, Bowers RM, Lin HT, Cowen JP, Rappé MS.

ISME J. 2016 Aug;10(8):2033-47. doi: 10.1038/ismej.2015.248. Epub 2016 Feb 12.

16.

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust.

Robador A, Jungbluth SP, LaRowe DE, Bowers RM, Rappé MS, Amend JP, Cowen JP.

Front Microbiol. 2015 Jan 14;5:748. doi: 10.3389/fmicb.2014.00748. eCollection 2014.

17.

Phylogenetic diversity of microorganisms in subseafloor crustal fluids from Holes 1025C and 1026B along the Juan de Fuca Ridge flank.

Jungbluth SP, Lin HT, Cowen JP, Glazer BT, Rappé MS.

Front Microbiol. 2014 Mar 25;5:119. doi: 10.3389/fmicb.2014.00119. eCollection 2014.

18.

Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank.

Jungbluth SP, Grote J, Lin HT, Cowen JP, Rappé MS.

ISME J. 2013 Jan;7(1):161-72. doi: 10.1038/ismej.2012.73. Epub 2012 Jul 12.

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