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Stable and Enriched Cenarchaeum symbiosum and Uncultured Betaproteobacteria HF1 in the Microbiome of the Mediterranean Sponge Haliclona fulva (Demospongiae: Haplosclerida).

García-Bonilla E, Brandão PFB, Pérez T, Junca H.

Microb Ecol. 2018 May 15. doi: 10.1007/s00248-018-1201-5. [Epub ahead of print]


Correction to: Microbial diversity of saline environments: searching for cytotoxic activities.

Díaz-Cárdenas C, Cantillo A, Rojas LY, Sandoval T, Fiorentino S, Robles J, Ramos FA, Zambrano MM, Baena S.

AMB Express. 2018 Mar 9;8(1):35. doi: 10.1186/s13568-018-0561-z.


Microbial diversity of saline environments: searching for cytotoxic activities.

Díaz-Cárdenas C, Cantillo A, Rojas LY, Sandoval T, Fiorentino S, Robles J, Ramos FA, Zambrano MM, Baena S.

AMB Express. 2017 Dec 22;7(1):223. doi: 10.1186/s13568-017-0527-6. Erratum in: AMB Express. 2018 Mar 9;8(1):35.


Bioelectrochemical Detection of Mycobacterium tuberculosis ESAT-6 in an Antibody-Based Biomicrosystem.

Sepulveda D, Aroca MA, Varela A, Del Portillo P, Osma JF.

Sensors (Basel). 2017 Sep 22;17(10). pii: E2178. doi: 10.3390/s17102178.


Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.

Alvarez-Silva MC, Álvarez-Yela AC, Gómez-Cano F, Zambrano MM, Husserl J, Danies G, Restrepo S, González-Barrios AF.

PLoS One. 2017 Aug 2;12(8):e0181826. doi: 10.1371/journal.pone.0181826. eCollection 2017.


In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch.

Medina LMP, Ardila DC, Zambrano MM, Restrepo S, Barrios AFG.

Biotechnol Rep (Amst). 2017 Jun 10;15:55-62. doi: 10.1016/j.btre.2017.06.003. eCollection 2017 Sep.


Mining lipolytic enzymes in community DNA from high Andean soils using a targeted approach.

Borda-Molina D, Montaña JS, Zambrano MM, Baena S.

Antonie Van Leeuwenhoek. 2017 Aug;110(8):1035-1051. doi: 10.1007/s10482-017-0877-8. Epub 2017 May 18.


Comparative Assessment of Mediterranean Gorgonian-Associated Microbial Communities Reveals Conserved Core and Locally Variant Bacteria.

van de Water JA, Melkonian R, Voolstra CR, Junca H, Beraud E, Allemand D, Ferrier-Pagès C.

Microb Ecol. 2017 Feb;73(2):466-478. doi: 10.1007/s00248-016-0858-x. Epub 2016 Oct 10.


Mycofier: a new machine learning-based classifier for fungal ITS sequences.

Delgado-Serrano L, Restrepo S, Bustos JR, Zambrano MM, Anzola JM.

BMC Res Notes. 2016 Aug 11;9(1):402. doi: 10.1186/s13104-016-2203-3.


Spirochaetes dominate the microbial community associated with the red coral Corallium rubrum on a broad geographic scale.

van de Water JA, Melkonian R, Junca H, Voolstra CR, Reynaud S, Allemand D, Ferrier-Pagès C.

Sci Rep. 2016 Jun 6;6:27277. doi: 10.1038/srep27277.


Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak.

Gálvez EJ, Carrillo-Castro K, Zárate L, Güiza L, Pieper DH, García-Bonilla E, Salazar M, Junca H.

Genome Announc. 2016 May 12;4(3). pii: e00321-16. doi: 10.1128/genomeA.00321-16.


Voices of biotech.

Amit I, Baker D, Barker R, Berger B, Bertozzi C, Bhatia S, Biffi A, Demichelis F, Doudna J, Dowdy SF, Endy D, Helmstaedter M, Junca H, June C, Kamb S, Khvorova A, Kim DH, Kim JS, Krishnan Y, Lakadamyali M, Lappalainen T, Lewin S, Liao J, Loman N, Lundberg E, Lynd L, Martin C, Mellman I, Miyawaki A, Mummery C, Nelson K, Paz J, Peralta-Yahya P, Picotti P, Polyak K, Prather K, Qin J, Quake S, Regev A, Rogers JA, Shetty R, Sommer M, Stevens M, Stolovitzky G, Takahashi M, Tang F, Teichmann S, Torres-Padilla ME, Tripathi L, Vemula P, Verdine G, Vollmer F, Wang J, Ying JY, Zhang F, Zhang T.

Nat Biotechnol. 2016 Mar;34(3):270-5. doi: 10.1038/nbt.3502. No abstract available.


Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem.

Ruiz-Pérez CA, Restrepo S, Zambrano MM.

Appl Environ Microbiol. 2016 Jan 8;82(6):1807-1817. doi: 10.1128/AEM.02781-15.


Microbial Toluene Removal in Hypoxic Model Constructed Wetlands Occurs Predominantly via the Ring Monooxygenation Pathway.

Martínez-Lavanchy PM, Chen Z, Lünsmann V, Marin-Cevada V, Vilchez-Vargas R, Pieper DH, Reiche N, Kappelmeyer U, Imparato V, Junca H, Nijenhuis I, Müller JA, Kuschk P, Heipieper HJ.

Appl Environ Microbiol. 2015 Sep;81(18):6241-52. doi: 10.1128/AEM.01822-15. Epub 2015 Jul 6.


Development of a genetic tool for functional screening of anti-malarial bioactive extracts in metagenomic libraries.

Mongui A, Pérez-Llanos FJ, Yamamoto MM, Lozano M, Zambrano MM, Del Portillo P, Fernández-Becerra C, Restrepo S, Del Portillo HA, Junca H.

Malar J. 2015 Jun 4;14:233. doi: 10.1186/s12936-015-0748-6.


Distinct composition signatures of archaeal and bacterial phylotypes in the Wanda Glacier forefield, Antarctic Peninsula.

Pessi IS, Osorio-Forero C, Gálvez EJ, Simões FL, Simões JC, Junca H, Macedo AJ.

FEMS Microbiol Ecol. 2015 Jan;91(1):1-10. doi: 10.1093/femsec/fiu005. Epub 2014 Dec 5.


AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics.

Duarte M, Jauregui R, Vilchez-Vargas R, Junca H, Pieper DH.

Database (Oxford). 2014 Dec 1;2014:bau118. doi: 10.1093/database/bau118. Print 2014.


Klebsiella pneumoniae yfiRNB operon affects biofilm formation, polysaccharide production and drug susceptibility.

Huertas MG, Zárate L, Acosta IC, Posada L, Cruz DP, Lozano M, Zambrano MM.

Microbiology. 2014 Dec;160(Pt 12):2595-606. doi: 10.1099/mic.0.081992-0. Epub 2014 Sep 26.


Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis.

Botero LE, Delgado-Serrano L, Cepeda ML, Bustos JR, Anzola JM, Del Portillo P, Robledo J, Zambrano MM.

Microbiome. 2014 Aug 25;2:29. doi: 10.1186/2049-2618-2-29. eCollection 2014.


Global adaptation to a lipid environment triggers the dormancy-related phenotype of Mycobacterium tuberculosis.

Rodríguez JG, Hernández AC, Helguera-Repetto C, Aguilar Ayala D, Guadarrama-Medina R, Anzóla JM, Bustos JR, Zambrano MM, González-Y-Merchand J, García MJ, Del Portillo P.

MBio. 2014 May 20;5(3):e01125-14. doi: 10.1128/mBio.01125-14. Erratum in: MBio. 2015;6(1):e02373-14.

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