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Items: 1 to 20 of 765

1.

Preventing carbon monoxide poisoning.

Jones SJ, Horton A, Brunt H, Shankar G.

BMJ. 2019 Jul 15;366:l4613. doi: 10.1136/bmj.l4613. No abstract available.

PMID:
31307998
2.

RTNduals: An R/Bioconductor package for analysis of co-regulation and inference of dual regulons.

Chagas VS, Groeneveld CS, Oliveira KG, Trefflich S, de Almeida RC, Ponder BAJ, Meyer KB, Jones SJM, Robertson AG, Castro MAA.

Bioinformatics. 2019 Jun 28. pii: btz534. doi: 10.1093/bioinformatics/btz534. [Epub ahead of print]

PMID:
31250887
3.

The Genome of the Steller Sea Lion (Eumetopias jubatus).

Kwan HH, Culibrk L, Taylor GA, Leelakumari S, Tan R, Jackman SD, Tse K, MacLeod T, Cheng D, Chuah E, Kirk H, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, Moore R, Birol I, Marra MA, Rosen DAS, Haulena M, Jones SJM.

Genes (Basel). 2019 Jun 26;10(7). pii: E486. doi: 10.3390/genes10070486.

4.

Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma.

Negri GL, Grande BM, Delaidelli A, El-Naggar A, Cochrane D, Lau CC, Triche TJ, Moore RA, Jones SJM, Montpetit A, Marra MA, Malkin D, Morin RD, Sorensen PH.

J Pathol. 2019 Jun 24. doi: 10.1002/path.5319. [Epub ahead of print]

PMID:
31236944
5.

Parenting styles are associated with overall child dietary quality within low-income and food-insecure households.

Burke MP, Jones SJ, Frongillo EA, Blake CE, Fram MS.

Public Health Nutr. 2019 Jun 17:1-9. doi: 10.1017/S1368980019001332. [Epub ahead of print]

PMID:
31203828
6.

Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada.

Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, McDonald H, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Doerksen T, Jaquish B, Bousquet J, Jones SJM, Bohlmann J, Birol I.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00382-19. doi: 10.1128/MRA.00382-19.

7.

Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada.

Lin D, Coombe L, Jackman SD, Gagalova KK, Warren RL, Hammond SA, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Jaquish B, Isabel N, Bousquet J, Jones SJM, Bohlmann J, Birol I.

Microbiol Resour Announc. 2019 Jun 6;8(23). pii: e00381-19. doi: 10.1128/MRA.00381-19.

8.

De Novo Sequencing, Assembly, and Annotation of Four Threespine Stickleback Genomes Based on Microfluidic Partitioned DNA Libraries.

Berner D, Roesti M, Bilobram S, Chan SK, Kirk H, Pandoh P, Taylor GA, Zhao Y, Jones SJM, DeFaveri J.

Genes (Basel). 2019 Jun 3;10(6). pii: E426. doi: 10.3390/genes10060426.

9.

Genomic characterization of a well-differentiated grade 3 pancreatic neuroendocrine tumor.

Williamson LM, Steel M, Grewal JK, Thibodeau ML, Zhao EY, Loree JM, Yang KC, Gorski SM, Mungall AJ, Mungall KL, Moore RA, Marra MA, Laskin J, Renouf DJ, Schaeffer DF, Jones SJM.

Cold Spring Harb Mol Case Stud. 2019 Jun 3;5(3). pii: a003814. doi: 10.1101/mcs.a003814. Print 2019 Jun.

10.

CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer.

Lever J, Zhao EY, Grewal J, Jones MR, Jones SJM.

Nat Methods. 2019 Jun;16(6):505-507. doi: 10.1038/s41592-019-0422-y. Epub 2019 May 20.

PMID:
31110280
11.

Food insecurity, childhood hunger and caregiver life experiences among households with children in South Carolina, USA.

Drucker ER, Liese AD, Sercy E, Bell BA, Draper C, Fleischer NL, Flory K, Jones SJ.

Public Health Nutr. 2019 May 17:1-10. doi: 10.1017/S1368980019000922. [Epub ahead of print]

PMID:
31097047
12.

ntEdit: scalable genome sequence polishing.

Warren RL, Coombe L, Mohamadi H, Zhang J, Jaquish B, Isabel N, Jones SJM, Bousquet J, Bohlmann J, Birol I.

Bioinformatics. 2019 May 16. pii: btz400. doi: 10.1093/bioinformatics/btz400. [Epub ahead of print]

PMID:
31095290
13.

NRG1 Gene Fusions Are Recurrent, Clinically Actionable Gene Rearrangements in KRAS Wild-Type Pancreatic Ductal Adenocarcinoma.

Jones MR, Williamson LM, Topham JT, Lee MKC, Goytain A, Ho J, Denroche RE, Jang G, Pleasance E, Shen Y, Karasinska JM, McGhie JP, Gill S, Lim HJ, Moore MJ, Wong HL, Ng T, Yip S, Zhang W, Sadeghi S, Reisle C, Mungall AJ, Mungall KL, Moore RA, Ma Y, Knox JJ, Gallinger S, Laskin J, Marra MA, Schaeffer DF, Jones SJM, Renouf DJ.

Clin Cancer Res. 2019 May 8. doi: 10.1158/1078-0432.CCR-19-0191. [Epub ahead of print]

PMID:
31068372
14.

Hyperkalemia during general anesthesia in two Greyhounds.

Jones SJ, Mama KR, Brock NK, Couto CG.

J Am Vet Med Assoc. 2019 Jun 1;254(11):1329-1334. doi: 10.2460/javma.254.11.1329.

PMID:
31067178
15.

Application of a Neural Network Whole Transcriptome-Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers.

Grewal JK, Tessier-Cloutier B, Jones M, Gakkhar S, Ma Y, Moore R, Mungall AJ, Zhao Y, Taylor MD, Gelmon K, Lim H, Renouf D, Laskin J, Marra M, Yip S, Jones SJM.

JAMA Netw Open. 2019 Apr 5;2(4):e192597. doi: 10.1001/jamanetworkopen.2019.2597.

16.

ORCA: A Comprehensive Bioinformatics Container Environment for Education and Research.

Jackman SD, Mozgacheva T, Chen S, O'Huiginn B, Bailey L, Birol I, Jones SJM.

Bioinformatics. 2019 Apr 20. pii: btz278. doi: 10.1093/bioinformatics/btz278. [Epub ahead of print]

PMID:
31004474
17.

Improved measures for evolutionary conservation that exploit taxonomy distances.

Malhis N, Jones SJM, Gsponer J.

Nat Commun. 2019 Apr 5;10(1):1556. doi: 10.1038/s41467-019-09583-2.

18.

RTNsurvival : An R/Bioconductor package for regulatory network survival analysis.

Groeneveld CS, Chagas VS, Jones SJM, Robertson AG, Ponder BAJ, Meyer KB, Castro MAA.

Bioinformatics. 2019 Mar 28. pii: btz229. doi: 10.1093/bioinformatics/btz229. [Epub ahead of print]

PMID:
30923832
19.

Rise of the Machines: Advances in Deep Learning for Cancer Diagnosis.

Levine AB, Schlosser C, Grewal J, Coope R, Jones SJM, Yip S.

Trends Cancer. 2019 Mar;5(3):157-169. doi: 10.1016/j.trecan.2019.02.002. Epub 2019 Feb 28. Review.

PMID:
30898263
20.

Base excision repair deficiency signatures implicate germline and somatic MUTYH aberrations in pancreatic ductal adenocarcinoma and breast cancer oncogenesis.

Thibodeau ML, Zhao EY, Reisle C, Ch'ng C, Wong HL, Shen Y, Jones MR, Lim HJ, Young S, Cremin C, Pleasance E, Zhang W, Holt R, Eirew P, Karasinska J, Kalloger SE, Taylor G, Majounie E, Bonakdar M, Zong Z, Bleile D, Chiu R, Birol I, Gelmon K, Lohrisch C, Mungall KL, Mungall AJ, Moore R, Ma YP, Fok A, Yip S, Karsan A, Huntsman D, Schaeffer DF, Laskin J, Marra MA, Renouf DJ, Jones SJM, Schrader KA.

Cold Spring Harb Mol Case Stud. 2019 Apr 1;5(2). pii: a003681. doi: 10.1101/mcs.a003681. Print 2019 Apr.

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