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Items: 20

1.
2.

Archaic Adaptive Introgression in TBX15/WARS2.

Racimo F, Gokhman D, Fumagalli M, Ko A, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sánchez E, Nielsen R.

Mol Biol Evol. 2017 Mar 1;34(3):509-524. doi: 10.1093/molbev/msw283.

3.

A time transect of exomes from a Native American population before and after European contact.

Lindo J, Huerta-Sánchez E, Nakagome S, Rasmussen M, Petzelt B, Mitchell J, Cybulski JS, Willerslev E, DeGiorgio M, Malhi RS.

Nat Commun. 2016 Nov 15;7:13175. doi: 10.1038/ncomms13175.

4.

Signatures of Archaic Adaptive Introgression in Present-Day Human Populations.

Racimo F, Marnetto D, Huerta-Sánchez E.

Mol Biol Evol. 2017 Feb 1;34(2):296-317. doi: 10.1093/molbev/msw216.

5.

Greenlandic Inuit show genetic signatures of diet and climate adaptation.

Fumagalli M, Moltke I, Grarup N, Racimo F, Bjerregaard P, Jørgensen ME, Korneliussen TS, Gerbault P, Skotte L, Linneberg A, Christensen C, Brandslund I, Jørgensen T, Huerta-Sánchez E, Schmidt EB, Pedersen O, Hansen T, Albrechtsen A, Nielsen R.

Science. 2015 Sep 18;349(6254):1343-7. doi: 10.1126/science.aab2319.

6.

Archaic inheritance: supporting high-altitude life in Tibet.

Huerta-Sánchez E, Casey FP.

J Appl Physiol (1985). 2015 Nov 15;119(10):1129-34. doi: 10.1152/japplphysiol.00322.2015. Epub 2015 Aug 20. Review.

7.

Evidence for archaic adaptive introgression in humans.

Racimo F, Sankararaman S, Nielsen R, Huerta-Sánchez E.

Nat Rev Genet. 2015 Jun;16(6):359-71. doi: 10.1038/nrg3936. Epub 2015 May 12. Review.

8.

Selection on a variant associated with improved viral clearance drives local, adaptive pseudogenization of interferon lambda 4 (IFNL4).

Key FM, Peter B, Dennis MY, Huerta-Sánchez E, Tang W, Prokunina-Olsson L, Nielsen R, Andrés AM.

PLoS Genet. 2014 Oct 16;10(10):e1004681. doi: 10.1371/journal.pgen.1004681. eCollection 2014 Oct. Erratum in: PLoS Genet. 2014 Nov;10(11):e1004882.

9.

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.

Huerta-Sánchez E, Jin X, Asan, Bianba Z, Peter BM, Vinckenbosch N, Liang Y, Yi X, He M, Somel M, Ni P, Wang B, Ou X, Huasang, Luosang J, Cuo ZX, Li K, Gao G, Yin Y, Wang W, Zhang X, Xu X, Yang H, Li Y, Wang J, Wang J, Nielsen R.

Nature. 2014 Aug 14;512(7513):194-7. doi: 10.1038/nature13408. Epub 2014 Jul 2.

10.

Robust demographic inference from genomic and SNP data.

Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M.

PLoS Genet. 2013 Oct;9(10):e1003905. doi: 10.1371/journal.pgen.1003905. Epub 2013 Oct 24.

11.

Quantifying population genetic differentiation from next-generation sequencing data.

Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sánchez E, Albrechtsen A, Nielsen R.

Genetics. 2013 Nov;195(3):979-92. doi: 10.1534/genetics.113.154740. Epub 2013 Aug 26.

12.

A scan for human-specific relaxation of negative selection reveals unexpected polymorphism in proteasome genes.

Somel M, Wilson Sayres MA, Jordan G, Huerta-Sanchez E, Fumagalli M, Ferrer-Admetlla A, Nielsen R.

Mol Biol Evol. 2013 Aug;30(8):1808-15. doi: 10.1093/molbev/mst098. Epub 2013 May 22.

13.

Genetic signatures reveal high-altitude adaptation in a set of ethiopian populations.

Huerta-Sánchez E, Degiorgio M, Pagani L, Tarekegn A, Ekong R, Antao T, Cardona A, Montgomery HE, Cavalleri GL, Robbins PA, Weale ME, Bradman N, Bekele E, Kivisild T, Tyler-Smith C, Nielsen R.

Mol Biol Evol. 2013 Aug;30(8):1877-88. doi: 10.1093/molbev/mst089. Epub 2013 May 10.

14.

Distinguishing between selective sweeps from standing variation and from a de novo mutation.

Peter BM, Huerta-Sanchez E, Nielsen R.

PLoS Genet. 2012;8(10):e1003011. doi: 10.1371/journal.pgen.1003011. Epub 2012 Oct 11.

15.

Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome.

Lohmueller KE, Albrechtsen A, Li Y, Kim SY, Korneliussen T, Vinckenbosch N, Tian G, Huerta-Sanchez E, Feder AF, Grarup N, Jørgensen T, Jiang T, Witte DR, Sandbæk A, Hellmann I, Lauritzen T, Hansen T, Pedersen O, Wang J, Nielsen R.

PLoS Genet. 2011 Oct;7(10):e1002326. doi: 10.1371/journal.pgen.1002326. Epub 2011 Oct 13.

16.

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants.

Li Y, Vinckenbosch N, Tian G, Huerta-Sanchez E, Jiang T, Jiang H, Albrechtsen A, Andersen G, Cao H, Korneliussen T, Grarup N, Guo Y, Hellman I, Jin X, Li Q, Liu J, Liu X, Sparsø T, Tang M, Wu H, Wu R, Yu C, Zheng H, Astrup A, Bolund L, Holmkvist J, Jørgensen T, Kristiansen K, Schmitz O, Schwartz TW, Zhang X, Li R, Yang H, Wang J, Hansen T, Pedersen O, Nielsen R, Wang J.

Nat Genet. 2010 Nov;42(11):969-72. doi: 10.1038/ng.680. Epub 2010 Oct 3.

PMID:
20890277
17.

Cattle demographic history modelled from autosomal sequence variation.

Murray C, Huerta-Sanchez E, Casey F, Bradley DG.

Philos Trans R Soc Lond B Biol Sci. 2010 Aug 27;365(1552):2531-9. doi: 10.1098/rstb.2010.0103.

18.

Sequencing of 50 human exomes reveals adaptation to high altitude.

Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, Xu X, Jiang H, Vinckenbosch N, Korneliussen TS, Zheng H, Liu T, He W, Li K, Luo R, Nie X, Wu H, Zhao M, Cao H, Zou J, Shan Y, Li S, Yang Q, Asan, Ni P, Tian G, Xu J, Liu X, Jiang T, Wu R, Zhou G, Tang M, Qin J, Wang T, Feng S, Li G, Huasang, Luosang J, Wang W, Chen F, Wang Y, Zheng X, Li Z, Bianba Z, Yang G, Wang X, Tang S, Gao G, Chen Y, Luo Z, Gusang L, Cao Z, Zhang Q, Ouyang W, Ren X, Liang H, Zheng H, Huang Y, Li J, Bolund L, Kristiansen K, Li Y, Zhang Y, Zhang X, Li R, Li S, Yang H, Nielsen R, Wang J, Wang J.

Science. 2010 Jul 2;329(5987):75-8. doi: 10.1126/science.1190371.

19.

Population genetics of polymorphism and divergence under fluctuating selection.

Huerta-Sanchez E, Durrett R, Bustamante CD.

Genetics. 2008 Jan;178(1):325-37. Epub 2007 Oct 18.

20.

Wagner's canalization model.

Huerta-Sanchez E, Durrett R.

Theor Popul Biol. 2007 Mar;71(2):121-30. Epub 2006 Nov 3.

PMID:
17178139

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