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Items: 1 to 20 of 37


Layers of regulation of cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae.

Kelliher CM, Foster MW, Motta FC, Deckard A, Soderblom EJ, Moseley MA, Haase SB.

Mol Biol Cell. 2018 Nov 1;29(22):2644-2655. doi: 10.1091/mbc.E18-04-0255. Epub 2018 Sep 12.


Antihypertensive medication withholding practices in hemodialysis: A survey study of patients and providers.

Haase SB, Chang S, Schiller B, Chertow GM, Chang TI.

Hemodial Int. 2018 Jul;22(3):415-418. doi: 10.1111/hdi.12640. Epub 2018 Feb 13. No abstract available.


Reconciling conflicting models for global control of cell-cycle transcription.

Cho CY, Motta FC, Kelliher CM, Deckard A, Haase SB.

Cell Cycle. 2017 Oct 18;16(20):1965-1978. doi: 10.1080/15384101.2017.1367073. Epub 2017 Sep 21.


Connecting virulence pathways to cell-cycle progression in the fungal pathogen Cryptococcus neoformans.

Kelliher CM, Haase SB.

Curr Genet. 2017 Oct;63(5):803-811. doi: 10.1007/s00294-017-0688-5. Epub 2017 Mar 6. Review.


Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans.

Kelliher CM, Leman AR, Sierra CS, Haase SB.

PLoS Genet. 2016 Dec 5;12(12):e1006453. doi: 10.1371/journal.pgen.1006453. eCollection 2016 Dec.


The Local Edge Machine: inference of dynamic models of gene regulation.

McGoff KA, Guo X, Deckard A, Kelliher CM, Leman AR, Francey LJ, Hogenesch JB, Haase SB, Harer JL.

Genome Biol. 2016 Oct 19;17(1):214.


SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.

Perea JA, Deckard A, Haase SB, Harer J.

BMC Bioinformatics. 2015 Aug 16;16:257. doi: 10.1186/s12859-015-0645-6.


Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.

Bristow SL, Leman AR, Simmons Kovacs LA, Deckard A, Harer J, Haase SB.

Genome Biol. 2014 Sep 5;15(9):446. doi: 10.1186/s13059-014-0446-7.


Analyzing transcription dynamics during the budding yeast cell cycle.

Leman AR, Bristow SL, Haase SB.

Methods Mol Biol. 2014;1170:295-312. doi: 10.1007/978-1-4939-0888-2_14.


Cell cycle-regulated transcription: effectively using a genomics toolbox.

Bristow SL, Leman AR, Haase SB.

Methods Mol Biol. 2014;1170:3-27. doi: 10.1007/978-1-4939-0888-2_1.


Topology and control of the cell-cycle-regulated transcriptional circuitry.

Haase SB, Wittenberg C.

Genetics. 2014 Jan;196(1):65-90. doi: 10.1534/genetics.113.152595. Review.


Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.

Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J.

Bioinformatics. 2013 Dec 15;29(24):3174-80. doi: 10.1093/bioinformatics/btt541. Epub 2013 Sep 20.


Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program.

Guo X, Bernard A, Orlando DA, Haase SB, Hartemink AJ.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):E968-77. doi: 10.1073/pnas.1120991110. Epub 2013 Feb 6.


New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae.

Chee MK, Haase SB.

G3 (Bethesda). 2012 May;2(5):515-26. doi: 10.1534/g3.111.001917. Epub 2012 May 1.


Parametric modeling of cellular state transitions as measured with flow cytometry.

Ho HJ, Lin TI, Chang HH, Haase SB, Huang S, Pyne S.

BMC Bioinformatics. 2012 Apr 12;13 Suppl 5:S5. doi: 10.1186/1471-2105-13-S5-S5.


Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network.

Simmons Kovacs LA, Mayhew MB, Orlando DA, Jin Y, Li Q, Huang C, Reed SI, Mukherjee S, Haase SB.

Mol Cell. 2012 Mar 9;45(5):669-79. doi: 10.1016/j.molcel.2011.12.033. Epub 2012 Feb 2. Erratum in: Mol Cell. 2013 Mar 28;49(6):1177-9.


A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.

Mayhew MB, Robinson JW, Jung B, Haase SB, Hartemink AJ.

Bioinformatics. 2011 Jul 1;27(13):i295-303. doi: 10.1093/bioinformatics/btr244.


B-cyclin/CDKs regulate mitotic spindle assembly by phosphorylating kinesins-5 in budding yeast.

Chee MK, Haase SB.

PLoS Genet. 2010 May 6;6(5):e1000935. doi: 10.1371/journal.pgen.1000935.


Cohesin: it's not just for chromosomes anymore.

Simmons Kovacs LA, Haase SB.

Cell Cycle. 2010 May;9(9):1750-3. Epub 2010 May 16. No abstract available.


A branching process model for flow cytometry and budding index measurements in cell synchrony experiments.

Orlando DA, Iversen ES Jr, Hartemink AJ, Haase SB.

Ann Appl Stat. 2009 Winter;3(4):1521-1541.

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