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Items: 19

1.

Modeling Single-Molecule Conformations of the HoxD Region in Mouse Embryonic Stem and Cortical Neuronal Cells.

Bianco S, Annunziatella C, Andrey G, Chiariello AM, Esposito A, Fiorillo L, Prisco A, Conte M, Campanile R, Nicodemi M.

Cell Rep. 2019 Aug 6;28(6):1574-1583.e4. doi: 10.1016/j.celrep.2019.07.013.

2.

Preformed chromatin topology assists transcriptional robustness of Shh during limb development.

Paliou C, Guckelberger P, Schöpflin R, Heinrich V, Esposito A, Chiariello AM, Bianco S, Annunziatella C, Helmuth J, Haas S, Jerković I, Brieske N, Wittler L, Timmermann B, Nicodemi M, Vingron M, Mundlos S, Andrey G.

Proc Natl Acad Sci U S A. 2019 Jun 18;116(25):12390-12399. doi: 10.1073/pnas.1900672116. Epub 2019 May 30.

PMID:
31147463
3.

Chromatin topology in development and disease.

Bompadre O, Andrey G.

Curr Opin Genet Dev. 2019 May 21;55:32-38. doi: 10.1016/j.gde.2019.04.007. [Epub ahead of print] Review.

PMID:
31125724
4.

Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations.

Kraft K, Magg A, Heinrich V, Riemenschneider C, Schöpflin R, Markowski J, Ibrahim DM, Acuna-Hidalgo R, Despang A, Andrey G, Wittler L, Timmermann B, Vingron M, Mundlos S.

Nat Cell Biol. 2019 Mar;21(3):305-310. doi: 10.1038/s41556-019-0273-x. Epub 2019 Feb 11.

PMID:
30742094
5.

Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.

Yakushiji-Kaminatsui N, Lopez-Delisle L, Bolt CC, Andrey G, Beccari L, Duboule D.

PLoS Biol. 2018 Nov 26;16(11):e3000004. doi: 10.1371/journal.pbio.3000004. eCollection 2018 Nov.

6.

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis.

Kragesteen BK, Spielmann M, Paliou C, Heinrich V, Schöpflin R, Esposito A, Annunziatella C, Bianco S, Chiariello AM, Jerković I, Harabula I, Guckelberger P, Pechstein M, Wittler L, Chan WL, Franke M, Lupiáñez DG, Kraft K, Timmermann B, Vingron M, Visel A, Nicodemi M, Mundlos S, Andrey G.

Nat Genet. 2018 Oct;50(10):1463-1473. doi: 10.1038/s41588-018-0221-x. Epub 2018 Sep 27.

PMID:
30262816
7.

Polymer physics predicts the effects of structural variants on chromatin architecture.

Bianco S, Lupiáñez DG, Chiariello AM, Annunziatella C, Kraft K, Schöpflin R, Wittler L, Andrey G, Vingron M, Pombo A, Mundlos S, Nicodemi M.

Nat Genet. 2018 May;50(5):662-667. doi: 10.1038/s41588-018-0098-8. Epub 2018 Apr 16.

PMID:
29662163
8.

Large genomic insertion at the Shh locus results in hammer toes through enhancer adoption.

Paliou C, Andrey G.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):839-841. doi: 10.1073/pnas.1721351115. Epub 2018 Jan 12. No abstract available.

9.

The three-dimensional genome: regulating gene expression during pluripotency and development.

Andrey G, Mundlos S.

Development. 2017 Oct 15;144(20):3646-3658. doi: 10.1242/dev.148304. Review.

10.

Integration of Shh and Fgf signaling in controlling Hox gene expression in cultured limb cells.

Rodrigues AR, Yakushiji-Kaminatsui N, Atsuta Y, Andrey G, Schorderet P, Duboule D, Tabin CJ.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3139-3144. doi: 10.1073/pnas.1620767114. Epub 2017 Mar 7.

11.

Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF.

Jerković I, Ibrahim DM, Andrey G, Haas S, Hansen P, Janetzki C, González Navarrete I, Robinson PN, Hecht J, Mundlos S.

PLoS Genet. 2017 Jan 19;13(1):e1006567. doi: 10.1371/journal.pgen.1006567. eCollection 2017 Jan.

12.

Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding.

Andrey G, Schöpflin R, Jerković I, Heinrich V, Ibrahim DM, Paliou C, Hochradel M, Timmermann B, Haas S, Vingron M, Mundlos S.

Genome Res. 2017 Feb;27(2):223-233. doi: 10.1101/gr.213066.116. Epub 2016 Dec 6.

13.

Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape.

Schep R, Necsulea A, Rodríguez-Carballo E, Guerreiro I, Andrey G, Nguyen Huynh TH, Marcet V, Zákány J, Duboule D, Beccari L.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729. Epub 2016 Nov 15.

14.

Formation of new chromatin domains determines pathogenicity of genomic duplications.

Franke M, Ibrahim DM, Andrey G, Schwarzer W, Heinrich V, Schöpflin R, Kraft K, Kempfer R, Jerković I, Chan WL, Spielmann M, Timmermann B, Wittler L, Kurth I, Cambiaso P, Zuffardi O, Houge G, Lambie L, Brancati F, Pombo A, Vingron M, Spitz F, Mundlos S.

Nature. 2016 Oct 13;538(7624):265-269. doi: 10.1038/nature19800. Epub 2016 Oct 5.

PMID:
27706140
15.

CRISPR/Cas9 Genome Editing in Embryonic Stem Cells.

Andrey G, Spielmann M.

Methods Mol Biol. 2017;1468:221-34. doi: 10.1007/978-1-4939-4035-6_15.

PMID:
27662879
16.

Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice.

Kraft K, Geuer S, Will AJ, Chan WL, Paliou C, Borschiwer M, Harabula I, Wittler L, Franke M, Ibrahim DM, Kragesteen BK, Spielmann M, Mundlos S, Lupiáñez DG, Andrey G.

Cell Rep. 2015 Feb 10;10(5):833-839. doi: 10.1016/j.celrep.2015.01.016. Epub 2015 Feb 7.

17.

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs.

Lopez-Rios J, Duchesne A, Speziale D, Andrey G, Peterson KA, Germann P, Unal E, Liu J, Floriot S, Barbey S, Gallard Y, Müller-Gerbl M, Courtney AD, Klopp C, Rodriguez S, Ivanek R, Beisel C, Wicking C, Iber D, Robert B, McMahon AP, Duboule D, Zeller R.

Nature. 2014 Jul 3;511(7507):46-51. doi: 10.1038/nature13289. Epub 2014 Jun 18.

PMID:
24990743
18.

SnapShot: Hox gene regulation.

Andrey G, Duboule D.

Cell. 2014 Feb 13;156(4):856-856.e1. doi: 10.1016/j.cell.2014.01.060. No abstract available.

19.

A switch between topological domains underlies HoxD genes collinearity in mouse limbs.

Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M, Trono D, Spitz F, Duboule D.

Science. 2013 Jun 7;340(6137):1234167. doi: 10.1126/science.1234167.

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