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Items: 1 to 20 of 258

1.

Evolution of off-lattice model proteins under ligand binding constraints.

Nelson ED, Grishin NV.

Phys Rev E. 2016 Aug;94(2-1):022410. doi: 10.1103/PhysRevE.94.022410. Epub 2016 Aug 15.

PMID:
27627338
2.

Compact Structure Patterns in Proteins.

Chitturi B, Shi S, Kinch LN, Grishin NV.

J Mol Biol. 2016 Aug 4. pii: S0022-2836(16)30289-3. doi: 10.1016/j.jmb.2016.07.022. [Epub ahead of print]

PMID:
27498165
3.

Proteomics Analysis Reveals Previously Uncharacterized Virulence Factors in Vibrio proteolyticus.

Ray A, Kinch LN, de Souza Santos M, Grishin NV, Orth K, Salomon D.

MBio. 2016 Jul 26;7(4). pii: e01077-16. doi: 10.1128/mBio.01077-16.

4.

HP1BP3, a Chromatin Retention Factor for Co-transcriptional MicroRNA Processing.

Liu H, Liang C, Kollipara RK, Matsui M, Ke X, Jeong BC, Wang Z, Yoo KS, Yadav GP, Kinch LN, Grishin NV, Nam Y, Corey DR, Kittler R, Liu Q.

Mol Cell. 2016 Aug 4;63(3):420-32. doi: 10.1016/j.molcel.2016.06.014. Epub 2016 Jul 14.

PMID:
27425409
5.

Bile salt receptor complex activates a pathogenic type III secretion system.

Li P, Rivera-Cancel G, Kinch LN, Salomon D, Tomchick DR, Grishin NV, Orth K.

Elife. 2016 Jul 5;5. pii: e15718. doi: 10.7554/eLife.15718.

6.

Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.

Bromberg R, Grishin NV, Otwinowski Z.

PLoS Comput Biol. 2016 Jun 23;12(6):e1004985. doi: 10.1371/journal.pcbi.1004985. eCollection 2016 Jun.

7.

Estimation of Uncertainties in the Global Distance Test (GDT_TS) for CASP Models.

Li W, Schaeffer RD, Otwinowski Z, Grishin NV.

PLoS One. 2016 May 5;11(5):e0154786. doi: 10.1371/journal.pone.0154786. eCollection 2016.

8.

Crystal structure of the human sterol transporter ABCG5/ABCG8.

Lee JY, Kinch LN, Borek DM, Wang J, Wang J, Urbatsch IL, Xie XS, Grishin NV, Cohen JC, Otwinowski Z, Hobbs HH, Rosenbaum DM.

Nature. 2016 May 4;533(7604):561-4. doi: 10.1038/nature17666.

PMID:
27144356
9.

Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence.

Cong Q, Shen J, Borek D, Robbins RK, Otwinowski Z, Grishin NV.

Sci Rep. 2016 Apr 28;6:24863. doi: 10.1038/srep24863.

10.

Direct Demonstration That Loop1 of Scap Binds to Loop7: A CRUCIAL EVENT IN CHOLESTEROL HOMEOSTASIS.

Zhang Y, Lee KM, Kinch LN, Clark L, Grishin NV, Rosenbaum DM, Brown MS, Goldstein JL, Radhakrishnan A.

J Biol Chem. 2016 Jun 10;291(24):12888-96. doi: 10.1074/jbc.M116.729798. Epub 2016 Apr 11.

PMID:
27068746
11.

Speciation in Cloudless Sulphurs Gleaned from Complete Genomes.

Cong Q, Shen J, Warren AD, Borek D, Otwinowski Z, Grishin NV.

Genome Biol Evol. 2016 Mar 30;8(3):915-31. doi: 10.1093/gbe/evw045.

12.

Absence of TLR11 in Mice Does Not Confer Susceptibility to Salmonella Typhi.

Song J, Wilhelm CL, Wangdi T, Maira-Litran T, Lee SJ, Raetz M, Sturge CR, Mirpuri J, Pei J, Grishin NV, McSorley SJ, Gewirtz AT, Bäumler AJ, Pier GB, Galán JE, Yarovinsky F.

Cell. 2016 Feb 25;164(5):827-8. doi: 10.1016/j.cell.2016.02.015. No abstract available.

13.

Assessment of CASP11 contact-assisted predictions.

Kinch LN, Li W, Monastyrskyy B, Kryshtafovych A, Grishin NV.

Proteins. 2016 Sep;84 Suppl 1:164-80. doi: 10.1002/prot.25020. Epub 2016 Mar 9.

PMID:
26889875
14.

Classification of proteins with shared motifs and internal repeats in the ECOD database.

Schaeffer RD, Kinch LN, Liao Y, Grishin NV.

Protein Sci. 2016 Jul;25(7):1188-203. doi: 10.1002/pro.2893. Epub 2016 Feb 21. Review.

PMID:
26833690
15.

The complete mitochondrial genome of Lerema accius and its phylogenetic implications.

Cong Q, Grishin NV.

PeerJ. 2016 Jan 7;4:e1546. doi: 10.7717/peerj.1546. eCollection 2016.

16.

CASP 11 target classification.

Kinch LN, Li W, Schaeffer RD, Dunbrack RL, Monastyrskyy B, Kryshtafovych A, Grishin NV.

Proteins. 2016 Sep;84 Suppl 1:20-33. doi: 10.1002/prot.24982. Epub 2016 Jan 27.

PMID:
26756794
17.

Evaluation of free modeling targets in CASP11 and ROLL.

Kinch LN, Li W, Monastyrskyy B, Kryshtafovych A, Grishin NV.

Proteins. 2016 Sep;84 Suppl 1:51-66. doi: 10.1002/prot.24973. Epub 2016 Jan 20.

PMID:
26677002
18.

Evolutionary conservation of complexins: from choanoflagellates to mice.

Yang X, Pei J, Kaeser-Woo YJ, Bacaj T, Grishin NV, Südhof TC.

EMBO Rep. 2015 Oct;16(10):1308-17. doi: 10.15252/embr.201540305. Epub 2015 Sep 3.

19.

SFESA: a web server for pairwise alignment refinement by secondary structure shifts.

Tong J, Pei J, Grishin NV.

BMC Bioinformatics. 2015 Sep 3;16:282. doi: 10.1186/s12859-015-0711-0.

20.

Large-scale determination of previously unsolved protein structures using evolutionary information.

Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D.

Elife. 2015 Sep 3;4:e09248. doi: 10.7554/eLife.09248.

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