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Items: 12

1.

Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage.

Freyre-González JA, Tauch A.

J Biotechnol. 2017 Sep 10;257:199-210. doi: 10.1016/j.jbiotec.2016.10.025. Epub 2016 Nov 6.

PMID:
27829123
2.

Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria.

Ibarra-Arellano MA, Campos-González AI, Treviño-Quintanilla LG, Tauch A, Freyre-González JA.

Database (Oxford). 2016 May 30;2016. pii: baw089. doi: 10.1093/database/baw089. Print 2016.

3.

Calcitriol increases Dicer expression and modifies the microRNAs signature in SiHa cervical cancer cells.

González-Duarte RJ, Cázares-Ordoñez V, Romero-Córdoba S, Díaz L, Ortíz V, Freyre-González JA, Hidalgo-Miranda A, Larrea F, Avila E.

Biochem Cell Biol. 2015 Aug;93(4):376-84. doi: 10.1139/bcb-2015-0010. Epub 2015 May 20.

PMID:
26111345
4.

Mathematical modeling of the apo and holo transcriptional regulation in Escherichia coli.

Alvarez-Vasquez FJ, Freyre-González JA, Balderas-Martínez YI, Delgado-Carrillo MI, Collado-Vides J.

Mol Biosyst. 2015 Apr;11(4):994-1003. doi: 10.1039/c4mb00561a.

PMID:
25683745
5.

Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability.

Treviño-Quintanilla LG, Freyre-González JA, Martínez-Flores I.

Curr Genomics. 2013 Sep;14(6):378-87. doi: 10.2174/1389202911314060007.

6.

Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.

Freyre-González JA, Manjarrez-Casas AM, Merino E, Martinez-Nuñez M, Perez-Rueda E, Gutiérrez-Ríos RM.

BMC Syst Biol. 2013 Nov 16;7:127. doi: 10.1186/1752-0509-7-127.

7.

Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach.

Freyre-González JA, Treviño-Quintanilla LG, Valtierra-Gutiérrez IA, Gutiérrez-Ríos RM, Alonso-Pavón JA.

J Biotechnol. 2012 Oct 31;161(3):278-86. doi: 10.1016/j.jbiotec.2012.03.028. Epub 2012 Jun 20.

PMID:
22728391
8.

Molecular characterization of chloranilic acid degradation in Pseudomonas putida TQ07.

Treviño-Quintanilla LG, Freyre-González JA, Guillén-Garcés RA, Olvera C.

J Microbiol. 2011 Dec;49(6):974-80. doi: 10.1007/s12275-011-1507-1. Epub 2011 Dec 28.

PMID:
22203561
9.

Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli.

Vázquez CD, Freyre-González JA, Gosset G, Loza JA, Gutiérrez-Ríos RM.

BMC Microbiol. 2009 Aug 24;9:176. doi: 10.1186/1471-2180-9-176.

10.

Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach.

Freyre-González JA, Alonso-Pavón JA, Treviño-Quintanilla LG, Collado-Vides J.

Genome Biol. 2008 Oct 27;9(10):R154. doi: 10.1186/gb-2008-9-10-r154.

11.

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

BMC Microbiol. 2007 Jun 8;7:53.

12.

Modular analysis of the transcriptional regulatory network of E. coli.

Resendis-Antonio O, Freyre-González JA, Menchaca-Méndez R, Gutiérrez-Ríos RM, Martínez-Antonio A, Avila-Sánchez C, Collado-Vides J.

Trends Genet. 2005 Jan;21(1):16-20.

PMID:
15680508

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