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Items: 1 to 20 of 29

1.

Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

Williams JL, Iamartino D, Pruitt KD, Sonstegard T, Smith TPL, Low WY, Biagini T, Bomba L, Capomaccio S, Castiglioni B, Coletta A, Corrado F, Ferré F, Iannuzzi L, Lawley C, Macciotta N, McClure M, Mancini G, Matassino D, Mazza R, Milanesi M, Moioli B, Morandi N, Ramunno L, Peretti V, Pilla F, Ramelli P, Schroeder S, Strozzi F, Thibaud-Nissen F, Zicarelli L, Ajmone-Marsan P, Valentini A, Chillemi G, Zimin A.

Gigascience. 2017 Oct 1;6(10):1-6. doi: 10.1093/gigascience/gix088.

2.

Johne's disease in cattle: an in vitro model to study early response to infection of Mycobacterium avium subsp. paratuberculosis using RNA-seq.

Marino R, Capoferri R, Panelli S, Minozzi G, Strozzi F, Trevisi E, Snel GGM, Ajmone-Marsan P, Williams JL.

Mol Immunol. 2017 Nov;91:259-271. doi: 10.1016/j.molimm.2017.08.017. Epub 2017 Oct 5.

PMID:
28988040
3.

Erratum to: Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism.

Wallace RJ, Snelling TJ, McCartney CA, Tapio I, Strozzi F.

Genet Sel Evol. 2017 Feb 28;49(1):27. doi: 10.1186/s12711-017-0304-7. No abstract available.

4.

The ruminal microbiome associated with methane emissions from ruminant livestock.

Tapio I, Snelling TJ, Strozzi F, Wallace RJ.

J Anim Sci Biotechnol. 2017 Jan 19;8:7. doi: 10.1186/s40104-017-0141-0. eCollection 2017. Review.

5.

QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize.

Maschietto V, Colombi C, Pirona R, Pea G, Strozzi F, Marocco A, Rossini L, Lanubile A.

BMC Plant Biol. 2017 Jan 21;17(1):20. doi: 10.1186/s12870-017-0970-1.

6.

Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism.

Wallace RJ, Snelling TJ, McCartney CA, Tapio I, Strozzi F.

Genet Sel Evol. 2017 Jan 16;49(1):9. doi: 10.1186/s12711-017-0285-6. Review. Erratum in: Genet Sel Evol. 2017 Feb 28;49(1):27.

7.

Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis.

Whitacre LK, Hoff JL, Schnabel RD, Albarella S, Ciotola F, Peretti V, Strozzi F, Ferrandi C, Ramunno L, Sonstegard TS, Williams JL, Taylor JF, Decker JE.

Sci Rep. 2017 Jan 3;7:39719. doi: 10.1038/srep39719.

8.

The Possible Innovative Use of Bifidobacterium longum W11 in Association With Rifaximin: A New Horizon for Combined Approach?

Graziano T, Amoruso A, Nicola S, Deidda F, Allesina S, Pane M, Piffanelli P, Strozzi F, Mogna L, Del Piano M.

J Clin Gastroenterol. 2016 Nov/Dec;50 Suppl 2, Proceedings from the 8th Probiotics, Prebiotics & New Foods for Microbiota and Human Health meeting held in Rome, Italy on September 13-15, 2015:S153-S156.

PMID:
27741162
9.

Transcriptome analysis of Pseudomonas mediterranea and P. corrugata plant pathogens during accumulation of medium-chain-length PHAs by glycerol bioconversion.

Licciardello G, Ferraro R, Russo M, Strozzi F, Catara AF, Bella P, Catara V.

N Biotechnol. 2017 Jul 25;37(Pt A):39-47. doi: 10.1016/j.nbt.2016.07.006. Epub 2016 Jul 18.

PMID:
27445200
10.

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.

Bolleman JT, Mungall CJ, Strozzi F, Baran J, Dumontier M, Bonnal RJ, Buels R, Hoehndorf R, Fujisawa T, Katayama T, Cock PJ.

J Biomed Semantics. 2016 Jun 13;7:39. doi: 10.1186/s13326-016-0067-z.

11.

Distinct lncRNA transcriptional fingerprints characterize progressive stages of multiple myeloma.

Ronchetti D, Agnelli L, Taiana E, Galletti S, Manzoni M, Todoerti K, Musto P, Strozzi F, Neri A.

Oncotarget. 2016 Mar 22;7(12):14814-30. doi: 10.18632/oncotarget.7442.

12.

RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.

Hamzić E, Kjærup RB, Mach N, Minozzi G, Strozzi F, Gualdi V, Williams JL, Chen J, Wattrang E, Buitenhuis B, Juul-Madsen HR, Dalgaard TS.

BMC Genomics. 2016 Jan 27;17:82. doi: 10.1186/s12864-016-2403-1.

13.

Expression of genes involved in the T cell signalling pathway in circulating immune cells of cattle 24 months following oral challenge with Bovine Amyloidotic Spongiform Encephalopathy (BASE).

Trovato A, Panelli S, Strozzi F, Cambulli C, Barbieri I, Martinelli N, Lombardi G, Capoferri R, Williams JL.

BMC Vet Res. 2015 May 9;11:105. doi: 10.1186/s12917-015-0412-y.

14.

SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species.

Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A.

BMC Genomics. 2015 Apr 10;16:283. doi: 10.1186/s12864-015-1497-1.

15.

Community-driven development for computational biology at Sprints, Hackathons and Codefests.

Möller S, Afgan E, Banck M, Bonnal RJ, Booth T, Chilton J, Cock PJ, Gumbel M, Harris N, Holland R, Kalaš M, Kaján L, Kibukawa E, Powel DR, Prins P, Quinn J, Sallou O, Strozzi F, Seemann T, Sloggett C, Soiland-Reyes S, Spooner W, Steinbiss S, Tille A, Travis AJ, Guimera R, Katayama T, Chapman BA.

BMC Bioinformatics. 2014;15 Suppl 14:S7. doi: 10.1186/1471-2105-15-S14-S7. Epub 2014 Nov 27.

16.

A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach.

Vendramin E, Pea G, Dondini L, Pacheco I, Dettori MT, Gazza L, Scalabrin S, Strozzi F, Tartarini S, Bassi D, Verde I, Rossini L.

PLoS One. 2014 Mar 3;9(3):e90574. doi: 10.1371/journal.pone.0090574. eCollection 2014. Erratum in: PLoS One. 2014;9(10):e112032.

17.

SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock.

Nicolazzi EL, Picciolini M, Strozzi F, Schnabel RD, Lawley C, Pirani A, Brew F, Stella A.

BMC Genomics. 2014 Feb 11;15:123. doi: 10.1186/1471-2164-15-123.

18.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T.

J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5.

19.

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.

Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A.

Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11.

20.

Transcript profiling of common bean nodules subjected to oxidative stress.

Ramírez M, Guillén G, Fuentes SI, Iñiguez LP, Aparicio-Fabre R, Zamorano-Sánchez D, Encarnación-Guevara S, Panzeri D, Castiglioni B, Cremonesi P, Strozzi F, Stella A, Girard L, Sparvoli F, Hernández G.

Physiol Plant. 2013 Nov;149(3):389-407. doi: 10.1111/ppl.12040. Epub 2013 Mar 28.

PMID:
23432573

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