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Items: 1 to 20 of 29


Conducting Multiple Imaging Modes with One Fluorescence Microscope.

Park S, Zhang J, Reyer MA, Zareba J, Troy AA, Fei J.

J Vis Exp. 2018 Oct 28;(140). doi: 10.3791/58320.


Specific structural elements of the T-box riboswitch drive the two-step binding of the tRNA ligand.

Zhang J, Chetnani B, Cormack ED, Alonso D, Liu W, Mondragón A, Fei J.

Elife. 2018 Sep 25;7. pii: e39518. doi: 10.7554/eLife.39518.


RNA Localization in Bacteria.

Fei J, Sharma CM.

Microbiol Spectr. 2018 Sep;6(5). doi: 10.1128/microbiolspec.RWR-0024-2018.


Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis.

Singh D, Wang Y, Mallon J, Yang O, Fei J, Poddar A, Ceylan D, Bailey S, Ha T.

Nat Struct Mol Biol. 2018 Apr;25(4):347-354. doi: 10.1038/s41594-018-0051-7. Epub 2018 Apr 5.


Quantitative Super-Resolution Imaging of Small RNAs in Bacterial Cells.

Park S, Bujnowska M, McLean EL, Fei J.

Methods Mol Biol. 2018;1737:199-212. doi: 10.1007/978-1-4939-7634-8_12.


Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution.

Fei J, Jadaliha M, Harmon TS, Li ITS, Hua B, Hao Q, Holehouse AS, Reyer M, Sun Q, Freier SM, Pappu RV, Prasanth KV, Ha T.

J Cell Sci. 2017 Dec 15;130(24):4180-4192. doi: 10.1242/jcs.206854. Epub 2017 Nov 13.


An Automated Image Analysis Method for Segmenting Fluorescent Bacteria in Three Dimensions.

Reyer MA, McLean EL, Chennakesavalu S, Fei J.

Biochemistry. 2018 Jan 16;57(2):209-215. doi: 10.1021/acs.biochem.7b00839. Epub 2017 Nov 10. Review.


Robust nonparametric quantification of clustering density of molecules in single-molecule localization microscopy.

Jiang S, Park S, Challapalli SD, Fei J, Wang Y.

PLoS One. 2017 Jun 21;12(6):e0179975. doi: 10.1371/journal.pone.0179975. eCollection 2017.


The Small Protein SgrT Controls Transport Activity of the Glucose-Specific Phosphotransferase System.

Lloyd CR, Park S, Fei J, Vanderpool CK.

J Bacteriol. 2017 May 9;199(11). pii: e00869-16. doi: 10.1128/JB.00869-16. Print 2017 Jun 1.


A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli.

Balasubramanian D, Ragunathan PT, Fei J, Vanderpool CK.

mSystems. 2016 Feb 9;1(1). pii: e00021-15. eCollection 2016 Jan-Feb.


Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9.

Singh D, Sternberg SH, Fei J, Doudna JA, Ha T.

Nat Commun. 2016 Sep 14;7:12778. doi: 10.1038/ncomms12778.


Natural antisense RNA promotes 3' end processing and maturation of MALAT1 lncRNA.

Zong X, Nakagawa S, Freier SM, Fei J, Ha T, Prasanth SG, Prasanth KV.

Nucleic Acids Res. 2016 Apr 7;44(6):2898-908. doi: 10.1093/nar/gkw047. Epub 2016 Jan 29.


Effects of DNA replication on mRNA noise.

Peterson JR, Cole JA, Fei J, Ha T, Luthey-Schulten ZA.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15886-91. doi: 10.1073/pnas.1516246112. Epub 2015 Dec 15.


Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells.

Zhang J, Fei J, Leslie BJ, Han KY, Kuhlman TE, Ha T.

Sci Rep. 2015 Nov 27;5:17295. doi: 10.1038/srep17295.


RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA.

Fei J, Singh D, Zhang Q, Park S, Balasubramanian D, Golding I, Vanderpool CK, Ha T.

Science. 2015 Mar 20;347(6228):1371-4. doi: 10.1126/science.1258849.


RNA fluorescence in situ hybridization in cultured mammalian cells.

Tripathi V, Fei J, Ha T, Prasanth KV.

Methods Mol Biol. 2015;1206:123-36. doi: 10.1007/978-1-4939-1369-5_11.


The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation.

Ning W, Fei J, Gonzalez RL Jr.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12073-8. doi: 10.1073/pnas.1401864111. Epub 2014 Aug 1.


A frameshifting stimulatory stem loop destabilizes the hybrid state and impedes ribosomal translocation.

Kim HK, Liu F, Fei J, Bustamante C, Gonzalez RL Jr, Tinoco I Jr.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5538-43. doi: 10.1073/pnas.1403457111. Epub 2014 Mar 31.


EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics.

Chen B, Boël G, Hashem Y, Ning W, Fei J, Wang C, Gonzalez RL Jr, Hunt JF, Frank J.

Nat Struct Mol Biol. 2014 Feb;21(2):152-9. doi: 10.1038/nsmb.2741. Epub 2014 Jan 5.


Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging.

Han KY, Leslie BJ, Fei J, Zhang J, Ha T.

J Am Chem Soc. 2013 Dec 18;135(50):19033-8. doi: 10.1021/ja411060p. Epub 2013 Dec 10.

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