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Page 1
Affinity-optimizing enhancer variants disrupt development.
Lim F, Solvason JJ, Ryan GE, Le SH, Jindal GA, Steffen P, Jandu SK, Farley EK. Lim F, et al. Among authors: farley ek. Nature. 2024 Feb;626(7997):151-159. doi: 10.1038/s41586-023-06922-8. Epub 2024 Jan 17. Nature. 2024. PMID: 38233525 Free PMC article.
Diverse logics and grammar encode notochord enhancers.
Song BP, Ragsac MF, Tellez K, Jindal GA, Grudzien JL, Le SH, Farley EK. Song BP, et al. Among authors: farley ek. Cell Rep. 2023 Feb 28;42(2):112052. doi: 10.1016/j.celrep.2023.112052. Epub 2023 Jan 31. Cell Rep. 2023. PMID: 36729834 Free PMC article.
Suboptimization of developmental enhancers.
Farley EK, Olson KM, Zhang W, Brandt AJ, Rokhsar DS, Levine MS. Farley EK, et al. Science. 2015 Oct 16;350(6258):325-8. doi: 10.1126/science.aac6948. Science. 2015. PMID: 26472909 Free PMC article.
Predictive analyses of regulatory sequences with EUGENe.
Klie A, Laub D, Talwar JV, Stites H, Jores T, Solvason JJ, Farley EK, Carter H. Klie A, et al. Among authors: farley ek. Nat Comput Sci. 2023 Nov;3(11):946-956. doi: 10.1038/s43588-023-00544-w. Epub 2023 Nov 16. Nat Comput Sci. 2023. PMID: 38177592 Free PMC article.
A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.
Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T. Zhang W, et al. Among authors: farley ek. Nat Genet. 2018 Apr;50(4):613-620. doi: 10.1038/s41588-018-0091-2. Epub 2018 Apr 2. Nat Genet. 2018. PMID: 29610481 Free PMC article.
18 results